Variant report

Variant	rs4589287
Chromosome Location	chr11:45295231-45295232
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11038375	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038376	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038386	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038387	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272368	1.00[ASN][1000 genomes]
rs12279005	1.00[CEU][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12292826	1.00[CEU][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938214	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58237254	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61554668	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104175	1.00[CEU][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109158	1.00[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45294800-45295600	Enhancers	A549	lung
2	chr11:45294800-45295800	Weak transcription	Fetal Intestine Large	intestine
3	chr11:45294800-45297400	Enhancers	Fetal Brain Male	brain
4	chr11:45294800-45297600	Enhancers	Fetal Brain Female	brain
5	chr11:45294800-45299000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr11:45295200-45296800	Weak transcription	HMEC	breast
7	chr11:45295200-45303600	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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