Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10006591	0.81[EUR][1000 genomes]
rs10017835	0.83[EUR][1000 genomes]
rs10024875	0.81[EUR][1000 genomes]
rs10461154	0.83[AMR][1000 genomes]
rs11098415	0.81[EUR][1000 genomes]
rs12641736	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2389474	0.81[EUR][1000 genomes]
rs2389476	0.81[EUR][1000 genomes]
rs28558955	0.83[AMR][1000 genomes]
rs4314350	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4481290	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4487434	0.83[AMR][1000 genomes]
rs4560487	0.83[AMR][1000 genomes]
rs6534064	0.80[EUR][1000 genomes]
rs6534071	0.81[EUR][1000 genomes]
rs6824077	0.81[EUR][1000 genomes]
rs6824944	0.81[EUR][1000 genomes]
rs6831649	0.81[EUR][1000 genomes]
rs6832316	0.81[EUR][1000 genomes]
rs6857576	0.81[EUR][1000 genomes]
rs72667473	0.84[AMR][1000 genomes]
rs7657155	0.81[EUR][1000 genomes]
rs9799400	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482390	chr4:118804378-118944823	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
2	nsv519017	chr4:118828807-119771481	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118843400-118843800	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr4:118843400-118843800	Active TSS	iPS-15b Cell Line	embryonic stem cell

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