Variant report

Variant	rs4590406
Chromosome Location	chr8:39035557-39035558
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10755978	0.83[AFR][1000 genomes]
rs12680934	0.92[AFR][1000 genomes]
rs4382439	0.94[AFR][1000 genomes]
rs4398876	0.93[AFR][1000 genomes]
rs4404879	0.92[AFR][1000 genomes]
rs4416797	0.93[AFR][1000 genomes]
rs4476978	0.92[AFR][1000 genomes]
rs4481554	0.99[AFR][1000 genomes]
rs4537269	0.90[AFR][1000 genomes]
rs4636164	0.92[AFR][1000 genomes]
rs4733906	0.92[AFR][1000 genomes]
rs4733984	0.92[AFR][1000 genomes]
rs6474122	0.90[AFR][1000 genomes]
rs6988368	0.93[AFR][1000 genomes]
rs7003066	0.94[AFR][1000 genomes]
rs7823183	0.92[AFR][1000 genomes]
rs7831826	1.00[AFR][1000 genomes]
rs7842665	0.83[AFR][1000 genomes]
rs7845771	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021581	chr8:38934014-39043954	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv1015907	chr8:38967169-39718559	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv539550	chr8:38967169-39718559	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1027443	chr8:38993423-39181079	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv539551	chr8:38993423-39181079	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:38971200-39036400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr8:39016200-39036200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr8:39016200-39036400	Weak transcription	Ovary	ovary
4	chr8:39029800-39039400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr8:39035000-39036600	Weak transcription	Adipose Nuclei	Adipose
6	chr8:39035000-39041600	Weak transcription	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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