Variant report

Variant	rs4591156
Chromosome Location	chr16:79874183-79874184
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11150223	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11641099	0.85[CHB][hapmap]
rs11649129	0.92[CHB][hapmap];0.87[CHD][hapmap]
rs16951534	0.81[ASW][hapmap];0.92[CHB][hapmap];0.83[CHD][hapmap];0.84[MEX][hapmap];0.82[AMR][1000 genomes]
rs4307960	0.85[CHB][hapmap]
rs7191528	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9928685	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833296	chr16:79692236-79889727	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv833297	chr16:79732501-79920419	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1059511	chr16:79847882-79925436	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv542984	chr16:79847882-79925436	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv573290	chr16:79853267-79939504	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv962206	chr16:79872651-79878527	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79868800-79874600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr16:79870400-79877400	Weak transcription	Thymus	Thymus
3	chr16:79871600-79874400	Enhancers	Fetal Muscle Leg	muscle
4	chr16:79872400-79874800	Weak transcription	K562	blood
5	chr16:79872600-79874400	Enhancers	Fetal Heart	heart
6	chr16:79872600-79875000	Enhancers	Rectal Smooth Muscle	rectum
7	chr16:79872800-79874600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr16:79872800-79874600	Enhancers	Colon Smooth Muscle	Colon
9	chr16:79872800-79875400	Enhancers	Fetal Stomach	stomach
10	chr16:79873000-79874400	Enhancers	Stomach Smooth Muscle	stomach
11	chr16:79873000-79874600	Enhancers	Ovary	ovary
12	chr16:79873000-79875000	Enhancers	Brain Germinal Matrix	brain
13	chr16:79873000-79875200	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr16:79873400-79874200	Enhancers	Fetal Muscle Trunk	muscle
15	chr16:79873600-79874600	Flanking Active TSS	Fetal Lung	lung
16	chr16:79873800-79874400	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr16:79873800-79874400	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr16:79874000-79875000	Active TSS	Fetal Brain Male	brain
19	chr16:79874000-79880600	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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