Variant report
Variant | rs4591539 |
---|---|
Chromosome Location | chr4:1279938-1279939 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:19)
- CpG islands (count:0)
- Chromatin interactive region (count:9)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:19 , 50 per page) page:
1
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | CTCF | chr4:1279938-1280238 | K562 | blood: | n/a | n/a |
2 | RAD21 | chr4:1279907-1280317 | H1-hESC | embryonic stem cell: | n/a | n/a |
3 | RAD21 | chr4:1279925-1280289 | A549 | lung: | n/a | n/a |
4 | RAD21 | chr4:1279828-1280368 | H1-hESC | embryonic stem cell: | n/a | n/a |
5 | USF1 | chr4:1279909-1280281 | H1-hESC | embryonic stem cell: | n/a | chr4:1280112-1280123 |
6 | YY1 | chr4:1279850-1280367 | H1-hESC | embryonic stem cell: | n/a | n/a |
7 | RAD21 | chr4:1279916-1280304 | HepG2 | liver: | n/a | n/a |
8 | GABPA | chr4:1279888-1280296 | H1-hESC | embryonic stem cell: | n/a | n/a |
9 | CTCF | chr4:1279916-1280335 | H1-hESC | embryonic stem cell: | n/a | n/a |
10 | CTCF | chr4:1279850-1280445 | A549 | lung: | n/a | n/a |
11 | CTCF | chr4:1279937-1280377 | K562 | blood: | n/a | n/a |
12 | CTCF | chr4:1279900-1280050 | HFF | foreskin: | n/a | n/a |
13 | SIN3A | chr4:1279926-1280314 | H1-hESC | embryonic stem cell: | n/a | n/a |
14 | RAD21 | chr4:1279895-1280299 | HepG2 | liver: | n/a | n/a |
15 | CTCF | chr4:1279880-1280322 | H1-hESC | embryonic stem cell: | n/a | n/a |
16 | RAD21 | chr4:1279836-1280334 | H1-hESC | embryonic stem cell: | n/a | n/a |
17 | CBX3 | chr4:1279904-1280463 | K562 | blood: | n/a | n/a |
18 | KAP1 | chr4:1279879-1280437 | HEK293 | kidney: | n/a | n/a |
19 | RAD21 | chr4:1279889-1280380 | A549 | lung: | n/a | n/a |
No data |
(count:9 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr4:1279366..1281863-chr4:1281921..1284803,4 | MCF-7 | breast: | |
2 | chr4:1238004..1246805-chr4:1279798..1288475,25 | K562 | blood: | |
3 | chr4:1238004..1248980-chr4:1275065..1286840,30 | K562 | blood: | |
4 | chr4:1242091..1248517-chr4:1279714..1285424,16 | MCF-7 | breast: | |
5 | chr4:1277701..1281340-chr4:1281394..1284175,9 | K562 | blood: | |
6 | chr4:1236833..1250005-chr4:1276188..1292579,54 | MCF-7 | breast: | |
7 | chr4:1076538..1078176-chr4:1278229..1280499,2 | MCF-7 | breast: | |
8 | chr4:1276332..1280187-chr4:1281301..1284175,8 | K562 | blood: | |
9 | chr4:1266374..1269150-chr4:1278693..1281595,2 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
MAEA | TF binding region |
ENSG00000090316 | Chromatin interaction |
ENSG00000196810 | Chromatin interaction |
ENSG00000159692 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10000874 | 0.88[EUR][1000 genomes] |
rs10023922 | 0.89[EUR][1000 genomes] |
rs10024013 | 0.85[EUR][1000 genomes] |
rs11247983 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs11247984 | 0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs11247986 | 0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs11247987 | 0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs11726778 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs11727167 | 0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs11730939 | 0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs11735340 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs12502916 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs12642396 | 0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs12642410 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs13108904 | 0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs13109112 | 0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs13112706 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs13119532 | 0.82[EUR][1000 genomes] |
rs13124383 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs13124847 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs13125338 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs13125842 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs13128045 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs13134106 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs13142772 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs13149575 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs13149715 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs13149952 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs13150571 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1316419 | 0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs1618072 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs1620928 | 0.89[EUR][1000 genomes] |
rs1680072 | 0.89[EUR][1000 genomes] |
rs1680073 | 0.89[EUR][1000 genomes] |
rs1680074 | 0.89[EUR][1000 genomes] |
rs1732099 | 0.89[EUR][1000 genomes] |
rs1732100 | 0.89[EUR][1000 genomes] |
rs1732102 | 0.89[EUR][1000 genomes] |
rs1732106 | 0.80[EUR][1000 genomes] |
rs1732107 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1732108 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1732123 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs1732124 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs1960426 | 0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2293635 | 0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs2878567 | 0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs28811276 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs4246685 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4405964 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4428235 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4493483 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4493484 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4516656 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4519749 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4642180 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4974545 | 0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs4974582 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4974584 | 0.89[EUR][1000 genomes] |
rs4974596 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs62293658 | 0.89[EUR][1000 genomes] |
rs66987549 | 0.85[EUR][1000 genomes] |
rs7670046 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs900027 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs900028 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs900029 | 0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs922698 | 0.89[EUR][1000 genomes] |
rs9631804 | 0.84[EUR][1000 genomes] |
rs9631805 | 0.84[EUR][1000 genomes] |
rs9992932 | 0.88[EUR][1000 genomes] |
rs9992934 | 0.84[EUR][1000 genomes] |
rs9993660 | 0.83[EUR][1000 genomes];0.93[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv822425 | chr4:540105-1413799 | Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 108 gene(s) | inside rSNPs | diseases |
2 | nsv530490 | chr4:614355-1399150 | Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 104 gene(s) | inside rSNPs | diseases |
3 | esv3339080 | chr4:970630-1546223 | Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 82 gene(s) | inside rSNPs | diseases |
4 | nsv829835 | chr4:1097586-1304239 | Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 59 gene(s) | inside rSNPs | diseases |
5 | nsv878328 | chr4:1141573-1990425 | Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 121 gene(s) | inside rSNPs | diseases |
6 | nsv878330 | chr4:1147407-1523930 | Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 71 gene(s) | inside rSNPs | diseases |
7 | nsv461152 | chr4:1159680-1415698 | Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 70 gene(s) | inside rSNPs | diseases |
8 | nsv593278 | chr4:1159680-1415698 | Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 70 gene(s) | inside rSNPs | diseases |
9 | nsv997971 | chr4:1191256-1518521 | Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 67 gene(s) | inside rSNPs | diseases |
10 | nsv461155 | chr4:1203265-1352685 | Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 66 gene(s) | inside rSNPs | diseases |
11 | nsv593281 | chr4:1203265-1352685 | Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 66 gene(s) | inside rSNPs | diseases |
12 | nsv1002097 | chr4:1212573-1320086 | Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 51 gene(s) | inside rSNPs | diseases |
13 | nsv536986 | chr4:1212573-1320086 | Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 51 gene(s) | inside rSNPs | diseases |
14 | esv1811773 | chr4:1228251-1287474 | ZNF genes & repeats Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 51 gene(s) | inside rSNPs | diseases |
15 | esv1800629 | chr4:1228451-1287274 | Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 51 gene(s) | inside rSNPs | diseases |
16 | esv1812851 | chr4:1228451-1287274 | Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 51 gene(s) | inside rSNPs | diseases |
17 | esv1823612 | chr4:1228451-1287274 | Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 51 gene(s) | inside rSNPs | diseases |
18 | esv1825633 | chr4:1228451-1287274 | Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 51 gene(s) | inside rSNPs | diseases |
19 | nsv593298 | chr4:1244267-1342521 | Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 36 gene(s) | inside rSNPs | diseases |
20 | nsv461156 | chr4:1254930-1312394 | Strong transcription Flanking Active TSS Genic enhancers Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
21 | nsv593299 | chr4:1254930-1312394 | Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
22 | esv1798897 | chr4:1265740-1287474 | Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 15 gene(s) | inside rSNPs | diseases |
23 | esv1833294 | chr4:1265740-1287474 | Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 15 gene(s) | inside rSNPs | diseases |
24 | esv1829934 | chr4:1265940-1287274 | Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 15 gene(s) | inside rSNPs | diseases |
25 | nsv593300 | chr4:1272664-1312394 | Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
26 | nsv878338 | chr4:1277826-1358449 | Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 34 gene(s) | inside rSNPs | diseases |
27 | nsv878339 | chr4:1277826-1363886 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 35 gene(s) | inside rSNPs | diseases |
28 | nsv878340 | chr4:1277826-1386570 | Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 36 gene(s) | inside rSNPs | diseases |
29 | nsv878341 | chr4:1277826-1391400 | Active TSS ZNF genes & repeats Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
SNP | Gene | Cis/trans | Tissue | Source |
---|---|---|---|---|
rs4591539 | CRIPAK | cis | Esophagus Mucosa | GTEx |
rs4591539 | MAEA | cis | Thyroid | GTEx |
rs4591539 | MAEA | cis | Nerve Tibial | GTEx |
rs4591539 | UVSSA | cis | Whole Blood | GTEx |
rs4591539 | UVSSA | cis | Stomach | GTEx |
rs4591539 | CRIPAK | cis | Thyroid | GTEx |
rs4591539 | UVSSA | cis | Thyroid | GTEx |
rs4591539 | CTBP1 | Cis_1M | lymphoblastoid | RTeQTL |
rs4591539 | UVSSA | cis | Skin Sun Exposed Lower leg | GTEx |
rs4591539 | CTBP1 | cis | multi-tissue | Pritchard |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:1245400-1282400 | Weak transcription | Brain Angular Gyrus | brain |
2 | chr4:1245800-1282600 | Weak transcription | Brain Inferior Temporal Lobe | brain |
3 | chr4:1245800-1282600 | Weak transcription | Right Ventricle | heart |
4 | chr4:1246000-1282600 | Weak transcription | Stomach Smooth Muscle | stomach |
5 | chr4:1254800-1282400 | Weak transcription | Pancreas | Pancrea |
6 | chr4:1259400-1283000 | Weak transcription | Ovary | ovary |
7 | chr4:1263400-1282600 | Weak transcription | Brain Hippocampus Middle | brain |
8 | chr4:1263800-1282800 | Weak transcription | Brain Anterior Caudate | brain |
9 | chr4:1265200-1280000 | Weak transcription | Brain Cingulate Gyrus | brain |
10 | chr4:1267800-1282400 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
11 | chr4:1270600-1282400 | Weak transcription | Lung | lung |
12 | chr4:1277400-1280000 | Weak transcription | Spleen | Spleen |
13 | chr4:1278800-1281000 | Enhancers | H1 Derived Mesenchymal Stem Cells | ES cell derived |
14 | chr4:1279600-1280600 | ZNF genes & repeats | Fetal Adrenal Gland | Adrenal Gland |
15 | chr4:1279800-1280200 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |