Variant report

Variant	rs4591808
Chromosome Location	chr6:73587489-73587490
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12211380	0.91[EUR][1000 genomes]
rs2096182	0.87[EUR][1000 genomes]
rs2211390	0.89[EUR][1000 genomes]
rs3920868	0.85[EUR][1000 genomes]
rs4706515	0.89[EUR][1000 genomes]
rs6903864	0.88[EUR][1000 genomes]
rs6909572	0.88[EUR][1000 genomes]
rs7758801	0.87[EUR][1000 genomes]
rs7770776	0.87[EUR][1000 genomes]
rs7770802	0.87[EUR][1000 genomes]
rs7771181	0.87[EUR][1000 genomes]
rs9342983	0.87[EUR][1000 genomes]
rs9342984	0.87[EUR][1000 genomes]
rs9350475	0.87[EUR][1000 genomes]
rs9351949	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9351953	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv470834	chr6:73546750-73596605	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
3	nsv886155	chr6:73551937-73649330	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886156	chr6:73578415-73603675	Weak transcription Enhancers Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73572000-73590200	Weak transcription	GM12878-XiMat	blood
2	chr6:73575800-73595400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:73580000-73595400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:73585000-73592600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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