Variant report
Variant | rs4593580 |
---|---|
Chromosome Location | chr8:119325210-119325211 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr8:119313185..119314685-chr8:119324258..119326116,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10087006 | 0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs10102091 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs10102185 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs10102483 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs10110149 | 0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs10481135 | 0.96[ASN][1000 genomes] |
rs10808497 | 0.87[EUR][1000 genomes] |
rs10955871 | 0.88[EUR][1000 genomes] |
rs11782250 | 0.89[EUR][1000 genomes] |
rs12155712 | 0.99[ASN][1000 genomes] |
rs12156385 | 0.87[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs1385806 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs1385807 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs1545925 | 0.89[EUR][1000 genomes] |
rs17748839 | 0.88[EUR][1000 genomes] |
rs1843535 | 0.86[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs1905938 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs2062425 | 0.81[EUR][1000 genomes] |
rs2062426 | 0.81[EUR][1000 genomes] |
rs28493856 | 0.89[EUR][1000 genomes] |
rs28508414 | 0.97[EUR][1000 genomes] |
rs28558308 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34008405 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs34458847 | 0.89[EUR][1000 genomes] |
rs34727859 | 0.89[EUR][1000 genomes] |
rs35027398 | 0.89[EUR][1000 genomes] |
rs35246465 | 0.86[EUR][1000 genomes] |
rs35595491 | 0.89[EUR][1000 genomes] |
rs35812722 | 0.82[EUR][1000 genomes] |
rs3802185 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs4496996 | 0.88[EUR][1000 genomes] |
rs4571758 | 0.89[EUR][1000 genomes] |
rs4592080 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs4628280 | 0.89[EUR][1000 genomes] |
rs4876409 | 0.89[EUR][1000 genomes] |
rs6469731 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6469732 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6469733 | 0.89[EUR][1000 genomes] |
rs6469734 | 0.95[ASN][1000 genomes] |
rs6980537 | 0.93[ASN][1000 genomes] |
rs6983634 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs6987634 | 0.87[EUR][1000 genomes] |
rs6988788 | 0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs6988804 | 0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs6991597 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs6993640 | 0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs6993964 | 0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs6994852 | 0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs6996584 | 0.89[EUR][1000 genomes] |
rs6996602 | 0.94[ASN][1000 genomes] |
rs7008800 | 0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs7009206 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs7010323 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs7013508 | 0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs7018387 | 0.86[ASN][1000 genomes] |
rs71515964 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs7813475 | 0.88[EUR][1000 genomes] |
rs7817627 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs7818835 | 0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs7819713 | 0.94[EUR][1000 genomes] |
rs7820290 | 0.92[EUR][1000 genomes] |
rs7820498 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs7823536 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7823689 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7827637 | 1.00[ASN][1000 genomes] |
rs7828165 | 0.86[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs7828224 | 0.89[EUR][1000 genomes] |
rs7828542 | 0.89[EUR][1000 genomes] |
rs7831174 | 0.94[ASN][1000 genomes] |
rs7831226 | 0.89[EUR][1000 genomes] |
rs7836216 | 0.90[EUR][1000 genomes] |
rs7837752 | 0.96[EUR][1000 genomes] |
rs7838723 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs7841049 | 0.89[EUR][1000 genomes] |
rs7841856 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs9642839 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs9694445 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv612047 | chr8:118939094-119468609 | Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
2 | nsv1015380 | chr8:118948652-119418389 | Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
3 | nsv539736 | chr8:118948652-119418389 | Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
4 | nsv1032681 | chr8:119153316-119609948 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
5 | nsv539737 | chr8:119153316-119609948 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
6 | nsv1016379 | chr8:119164234-119448910 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
7 | nsv831442 | chr8:119181675-119390122 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
8 | nsv8382 | chr8:119324224-119341066 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:119322800-119325600 | Weak transcription | Pancreas | Pancrea |
2 | chr8:119323000-119329400 | Weak transcription | Left Ventricle | heart |
3 | chr8:119323000-119357600 | Weak transcription | Aorta | Aorta |
4 | chr8:119323000-119394000 | Weak transcription | Rectal Mucosa Donor 31 | rectum |
5 | chr8:119323200-119329800 | Weak transcription | Liver | Liver |
6 | chr8:119323800-119362400 | Weak transcription | GM12878-XiMat | blood |
7 | chr8:119324400-119325400 | Enhancers | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
8 | chr8:119324400-119338000 | Weak transcription | Small Intestine | intestine |
9 | chr8:119324600-119325800 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |