Variant report
| Variant | rs4594036 |
|---|---|
| Chromosome Location | chr12:60832362-60832363 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:86)
| rs_ID | r2[population] |
|---|---|
| rs1021886 | 1.00[ASN][1000 genomes] |
| rs10784049 | 0.96[ASN][1000 genomes] |
| rs11173406 | 0.92[ASN][1000 genomes] |
| rs1119985 | 1.00[ASN][1000 genomes] |
| rs1119986 | 1.00[ASN][1000 genomes] |
| rs1119987 | 1.00[ASN][1000 genomes] |
| rs12312951 | 1.00[ASN][1000 genomes] |
| rs12313027 | 1.00[ASN][1000 genomes] |
| rs1466939 | 0.96[ASN][1000 genomes] |
| rs1472738 | 1.00[ASN][1000 genomes] |
| rs1504445 | 1.00[ASN][1000 genomes] |
| rs1504447 | 1.00[ASN][1000 genomes] |
| rs1504448 | 1.00[ASN][1000 genomes] |
| rs1504461 | 0.96[ASN][1000 genomes] |
| rs1587823 | 1.00[ASN][1000 genomes] |
| rs1604863 | 0.88[ASN][1000 genomes] |
| rs1604864 | 1.00[ASN][1000 genomes] |
| rs17123761 | 1.00[ASN][1000 genomes] |
| rs17123775 | 1.00[ASN][1000 genomes] |
| rs1827639 | 1.00[ASN][1000 genomes] |
| rs1827640 | 1.00[ASN][1000 genomes] |
| rs1910676 | 1.00[ASN][1000 genomes] |
| rs1960370 | 1.00[ASN][1000 genomes] |
| rs1961693 | 1.00[ASN][1000 genomes] |
| rs1967225 | 1.00[ASN][1000 genomes] |
| rs1995517 | 0.92[ASN][1000 genomes] |
| rs2047909 | 1.00[ASN][1000 genomes] |
| rs2047910 | 1.00[ASN][1000 genomes] |
| rs2047911 | 1.00[ASN][1000 genomes] |
| rs2089152 | 1.00[ASN][1000 genomes] |
| rs2089153 | 1.00[ASN][1000 genomes] |
| rs2102256 | 1.00[ASN][1000 genomes] |
| rs2134884 | 1.00[ASN][1000 genomes] |
| rs2134885 | 1.00[ASN][1000 genomes] |
| rs2134886 | 1.00[ASN][1000 genomes] |
| rs2202363 | 1.00[ASN][1000 genomes] |
| rs2202364 | 1.00[ASN][1000 genomes] |
| rs2262938 | 1.00[ASN][1000 genomes] |
| rs2262940 | 1.00[ASN][1000 genomes] |
| rs2363586 | 0.88[ASN][1000 genomes] |
| rs2455997 | 1.00[ASN][1000 genomes] |
| rs2468380 | 1.00[ASN][1000 genomes] |
| rs2468381 | 1.00[ASN][1000 genomes] |
| rs2655850 | 1.00[ASN][1000 genomes] |
| rs2655854 | 0.96[ASN][1000 genomes] |
| rs2655855 | 1.00[ASN][1000 genomes] |
| rs2655862 | 1.00[ASN][1000 genomes] |
| rs2655863 | 0.86[ASN][1000 genomes] |
| rs2655864 | 1.00[ASN][1000 genomes] |
| rs2655865 | 1.00[ASN][1000 genomes] |
| rs2655866 | 1.00[ASN][1000 genomes] |
| rs2655867 | 1.00[ASN][1000 genomes] |
| rs2655869 | 1.00[ASN][1000 genomes] |
| rs2655870 | 1.00[ASN][1000 genomes] |
| rs2655872 | 1.00[ASN][1000 genomes] |
| rs2655874 | 1.00[ASN][1000 genomes] |
| rs2655876 | 1.00[ASN][1000 genomes] |
| rs2655881 | 1.00[ASN][1000 genomes] |
| rs2655882 | 1.00[ASN][1000 genomes] |
| rs2655883 | 1.00[ASN][1000 genomes] |
| rs2731450 | 1.00[ASN][1000 genomes] |
| rs2731452 | 1.00[ASN][1000 genomes] |
| rs2731453 | 1.00[ASN][1000 genomes] |
| rs2731454 | 1.00[ASN][1000 genomes] |
| rs2731461 | 1.00[ASN][1000 genomes] |
| rs2731463 | 1.00[ASN][1000 genomes] |
| rs2731464 | 1.00[ASN][1000 genomes] |
| rs2731466 | 1.00[ASN][1000 genomes] |
| rs2731479 | 1.00[ASN][1000 genomes] |
| rs2731480 | 1.00[ASN][1000 genomes] |
| rs2731481 | 1.00[ASN][1000 genomes] |
| rs2731483 | 1.00[ASN][1000 genomes] |
| rs2731486 | 1.00[ASN][1000 genomes] |
| rs2731493 | 1.00[ASN][1000 genomes] |
| rs2938649 | 0.88[ASN][1000 genomes] |
| rs2956516 | 1.00[ASN][1000 genomes] |
| rs4500518 | 0.92[ASN][1000 genomes] |
| rs56915133 | 1.00[ASN][1000 genomes] |
| rs6581317 | 0.92[ASN][1000 genomes] |
| rs7307145 | 0.96[ASN][1000 genomes] |
| rs7307414 | 1.00[ASN][1000 genomes] |
| rs7307798 | 1.00[ASN][1000 genomes] |
| rs7968422 | 0.92[ASN][1000 genomes] |
| rs7974290 | 0.92[ASN][1000 genomes] |
| rs905724 | 0.96[ASN][1000 genomes] |
| rs905725 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1054287 | chr12:60601870-60861866 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1047466 | chr12:60702221-61521156 | Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv832432 | chr12:60801619-60968907 | Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:60830600-60832400 | Enhancers | HUVEC | blood vessel |
