Variant report

Variant	rs4597746
Chromosome Location	chr3:110071845-110071846
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11706268	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11707827	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11713100	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11713805	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11714866	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12639192	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13067568	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13078836	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13086848	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13087004	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13087052	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1585520	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2614680	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs34871943	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4408892	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682573	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7637078	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv829668	chr3:109956403-110095215	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv460818	chr3:110007205-110155824	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv591272	chr3:110007205-110155824	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2757885	chr3:110013166-110095330	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2759168	chr3:110013166-110095330	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv829669	chr3:110022724-110188397	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110069200-110073400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:110071400-110072400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:110071400-110072400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:110071400-110072400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr3:110071400-110072400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:110071400-110072400	Enhancers	NHLF	lung
7	chr3:110071400-110072600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr3:110071400-110072600	Enhancers	HSMMtube	muscle
9	chr3:110071600-110072000	Enhancers	Hela-S3	cervix
10	chr3:110071600-110072400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr3:110071600-110072400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:110071600-110072400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:110071600-110072400	Enhancers	HSMM	muscle
14	chr3:110071600-110072400	Enhancers	NHDF-Ad	bronchial
15	chr3:110071600-110072800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:110071600-110073800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr3:110071800-110072800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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