Variant report

Variant	rs459799
Chromosome Location	chr18:11320782-11320783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs16976089	0.93[ASN][1000 genomes]
rs370233	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap]
rs376865	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs394655	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs397147	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs405515	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs455369	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs455662	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs455675	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs456908	0.81[EUR][1000 genomes]
rs457112	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs457234	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs457478	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs457626	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs457630	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs457914	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs458813	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs459329	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs460297	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs462136	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs464224	0.81[EUR][1000 genomes]
rs464439	0.81[EUR][1000 genomes]
rs464979	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs465884	0.81[EUR][1000 genomes]
rs466179	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs466320	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs466890	0.81[EUR][1000 genomes]
rs467394	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4796919	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4796920	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73402962	0.96[ASN][1000 genomes]
rs98452	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv458029	chr18:10814334-11662151	Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv576480	chr18:10814334-11662151	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1066659	chr18:11246502-11709409	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
4	nsv1057976	chr18:11251898-11664914	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
5	nsv543650	chr18:11251898-11664914	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
6	nsv833589	chr18:11293101-11454521	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11318800-11323400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr18:11320000-11322600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr18:11320200-11322200	Enhancers	HSMM	muscle
4	chr18:11320200-11322400	Enhancers	Dnd41	blood
5	chr18:11320200-11325600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr18:11320200-11328200	Enhancers	NHDF-Ad	bronchial
7	chr18:11320400-11320800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr18:11320400-11321200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr18:11320400-11321400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr18:11320400-11321800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr18:11320400-11321800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr18:11320400-11322200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr18:11320400-11324800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr18:11320400-11325000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr18:11320400-11327000	Enhancers	NH-A	brain
16	chr18:11320600-11321000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr18:11320600-11321000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr18:11320600-11321400	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr18:11320600-11321400	Enhancers	HSMMtube	muscle
20	chr18:11320600-11321600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr18:11320600-11321800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr18:11320600-11321800	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr18:11320600-11321800	Enhancers	NHLF	lung
24	chr18:11320600-11322000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr18:11320600-11322200	Enhancers	Primary hematopoietic stem cells	blood

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