Variant report

Variant	rs4603819
Chromosome Location	chr6:170649044-170649045
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12998409	0.83[AMR][1000 genomes]
rs4074647	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4074648	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4953625	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6722217	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6732424	0.81[ASN][1000 genomes]
rs7563144	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7563465	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9798043	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529761	chr6:170041800-170921089	Bivalent Enhancer Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv534180	chr6:170088905-170892302	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv538568	chr6:170233490-170890109	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv916501	chr6:170329996-171023595	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv1018367	chr6:170474381-170890249	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
6	nsv538571	chr6:170474381-170890249	Enhancers Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
7	nsv817323	chr6:170526161-171023595	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
8	nsv1030777	chr6:170526232-170901279	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
9	nsv533172	chr6:170540592-170667507	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
10	nsv1024645	chr6:170560425-170901279	Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
11	nsv817349	chr6:170566148-171023595	Bivalent Enhancer Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
12	esv2758097	chr6:170581751-170832763	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
13	esv2759497	chr6:170581751-171009919	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
14	nsv428158	chr6:170581751-171009919	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
15	nsv916002	chr6:170591590-170808259	ZNF genes & repeats Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
16	nsv1031137	chr6:170603966-170745464	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
17	nsv538573	chr6:170603966-170745464	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
18	nsv1029280	chr6:170639127-170890109	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
19	nsv538574	chr6:170639127-170890109	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:170626400-170658600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:170626800-170653800	Weak transcription	Psoas Muscle	Psoas
3	chr6:170627200-170651600	Weak transcription	Stomach Mucosa	stomach
4	chr6:170628400-170653800	Weak transcription	Hela-S3	cervix
5	chr6:170634400-170653600	Weak transcription	A549	lung
6	chr6:170637000-170650000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:170637200-170668400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:170639800-170651600	Weak transcription	Small Intestine	intestine
9	chr6:170640000-170650000	Weak transcription	Esophagus	oesophagus
10	chr6:170640000-170653600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:170640000-170653800	Weak transcription	NHDF-Ad	bronchial
12	chr6:170640200-170649800	Weak transcription	Spleen	Spleen
13	chr6:170640200-170653600	Weak transcription	Brain Angular Gyrus	brain
14	chr6:170640400-170653400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr6:170640400-170654600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr6:170640400-170657400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr6:170640400-170657600	Weak transcription	Fetal Brain Male	brain
18	chr6:170640600-170652600	Weak transcription	K562	blood
19	chr6:170640600-170653800	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr6:170640600-170659400	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr6:170640600-170660000	Weak transcription	Fetal Heart	heart
22	chr6:170640800-170653800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr6:170641000-170651400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr6:170641200-170649800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:170641200-170653000	Weak transcription	Pancreas	Pancrea
26	chr6:170641200-170653600	Weak transcription	Rectal Smooth Muscle	rectum
27	chr6:170641200-170653800	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr6:170641200-170657200	Weak transcription	Aorta	Aorta
29	chr6:170641400-170650000	Weak transcription	Stomach Smooth Muscle	stomach
30	chr6:170641400-170653600	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr6:170641400-170653600	Weak transcription	Colon Smooth Muscle	Colon
32	chr6:170641600-170653600	Weak transcription	Colonic Mucosa	Colon
33	chr6:170642000-170653600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr6:170642000-170653800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr6:170643000-170653600	Weak transcription	NHEK	skin
36	chr6:170643200-170653800	Weak transcription	Fetal Brain Female	brain
37	chr6:170643600-170653800	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr6:170643800-170649200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr6:170643800-170649200	Weak transcription	Duodenum Mucosa	Duodenum
40	chr6:170643800-170649400	Weak transcription	Liver	Liver
41	chr6:170643800-170649400	Weak transcription	Fetal Thymus	thymus
42	chr6:170643800-170649400	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr6:170643800-170649800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr6:170643800-170649800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr6:170643800-170649800	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr6:170643800-170649800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr6:170643800-170649800	Weak transcription	Fetal Intestine Large	intestine
48	chr6:170643800-170649800	Weak transcription	Fetal Intestine Small	intestine
49	chr6:170643800-170649800	Weak transcription	Fetal Muscle Trunk	muscle
50	chr6:170643800-170649800	Weak transcription	Fetal Stomach	stomach

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