Variant report

Variant	rs4605762
Chromosome Location	chr5:74558166-74558167
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12109939	0.85[AMR][1000 genomes]
rs16872461	0.83[AMR][1000 genomes]
rs61434572	0.85[AMR][1000 genomes]
rs6867014	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73116849	0.83[AMR][1000 genomes]
rs73116860	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73129036	0.85[AMR][1000 genomes]
rs73131028	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016610	chr5:74403611-74627654	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2758000	chr5:74433760-74611714	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2759350	chr5:74433760-74611714	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74556000-74559000	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr5:74556000-74559200	Enhancers	Fetal Intestine Large	intestine
3	chr5:74556000-74559200	Enhancers	Fetal Intestine Small	intestine
4	chr5:74557000-74561400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:74557200-74558400	Enhancers	Fetal Kidney	kidney
6	chr5:74557600-74558600	Enhancers	Stomach Mucosa	stomach
7	chr5:74557800-74559000	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr5:74558000-74558400	Flanking Active TSS	Duodenum Mucosa	Duodenum
9	chr5:74558000-74558400	Enhancers	Pancreas	Pancrea
10	chr5:74558000-74558400	Flanking Active TSS	HepG2	liver
11	chr5:74558000-74559200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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