Variant report

Variant	rs4606156
Chromosome Location	chr9:14739564-14739565
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11789504	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17290109	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs41265300	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4297129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4412445	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4579619	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7033371	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7036802	0.80[AMR][1000 genomes]
rs7047712	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73413719	0.85[EUR][1000 genomes]
rs7858241	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv613637	chr9:14524438-15011915	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv3362157	chr9:14542189-14791977	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1025566	chr9:14687088-14791199	ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv933345	chr9:14695436-14750474	Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv892614	chr9:14712257-14756969	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14717800-14746200	Weak transcription	Pancreas	Pancrea
2	chr9:14726200-14746200	Weak transcription	Aorta	Aorta
3	chr9:14727400-14746200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:14730800-14764400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:14731400-14744800	Weak transcription	Fetal Muscle Leg	muscle
6	chr9:14732200-14744800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr9:14732600-14755200	Weak transcription	Fetal Intestine Large	intestine
8	chr9:14733200-14740200	Strong transcription	Fetal Lung	lung
9	chr9:14733600-14749000	Strong transcription	HepG2	liver
10	chr9:14735200-14746400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr9:14736600-14746200	Weak transcription	Fetal Stomach	stomach
12	chr9:14737400-14746600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr9:14737800-14745800	Weak transcription	Fetal Muscle Trunk	muscle
14	chr9:14738000-14746200	Weak transcription	Duodenum Mucosa	Duodenum
15	chr9:14738200-14739800	Weak transcription	Colon Smooth Muscle	Colon
16	chr9:14738600-14739800	Weak transcription	Fetal Kidney	kidney
17	chr9:14738600-14740000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr9:14738600-14741600	Weak transcription	Adipose Nuclei	Adipose
19	chr9:14738600-14746000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr9:14739400-14739800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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