Variant report

Variant	rs460870
Chromosome Location	chr20:15619338-15619339
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10485537	0.81[JPT][hapmap]
rs115021	0.93[JPT][hapmap]
rs461619	0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2751909	chr20:15489871-15656007	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs460870	ZNF620	trans	cerebellum	SCAN

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15616800-15619400	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr20:15616800-15619800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr20:15617000-15619600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr20:15617000-15619800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr20:15617000-15619800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr20:15617000-15620400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr20:15617200-15619800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr20:15617200-15619800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr20:15617600-15629000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr20:15618000-15619400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr20:15618000-15619400	Enhancers	Colon Smooth Muscle	Colon
12	chr20:15618000-15619800	Enhancers	Fetal Heart	heart
13	chr20:15618200-15619400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr20:15618200-15619400	Enhancers	Fetal Kidney	kidney
15	chr20:15618200-15619600	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr20:15618400-15619400	Enhancers	Rectal Smooth Muscle	rectum
17	chr20:15618400-15620000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr20:15618400-15620400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr20:15618600-15619800	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr20:15618600-15619800	Enhancers	Fetal Stomach	stomach
21	chr20:15618800-15622600	Weak transcription	Aorta	Aorta
22	chr20:15619000-15619600	Enhancers	H9 Cell Line	embryonic stem cell
23	chr20:15619000-15620200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr20:15619000-15622000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr20:15619000-15622400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr20:15619000-15622600	Weak transcription	Brain Substantia Nigra	brain
27	chr20:15619200-15619400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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