Variant report

Variant	rs4609476
Chromosome Location	chr1:47580647-47580648
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10890462	0.85[AMR][1000 genomes]
rs10890464	0.84[AMR][1000 genomes]
rs10890465	0.84[AMR][1000 genomes]
rs10890466	0.84[AMR][1000 genomes]
rs10890467	0.84[AMR][1000 genomes]
rs11211449	0.83[AMR][1000 genomes]
rs11211455	0.89[AMR][1000 genomes]
rs11211456	0.86[AMR][1000 genomes]
rs11211457	0.86[AMR][1000 genomes]
rs11211458	0.93[AMR][1000 genomes]
rs11211459	0.89[AMR][1000 genomes]
rs12037014	0.82[AMR][1000 genomes]
rs12042073	0.84[AMR][1000 genomes]
rs12046348	0.84[AMR][1000 genomes]
rs12124648	0.84[AMR][1000 genomes]
rs1967756	0.84[AMR][1000 genomes]
rs1967757	0.83[AMR][1000 genomes]
rs28462300	0.84[AMR][1000 genomes]
rs3850876	0.80[AMR][1000 genomes]
rs4926869	0.85[AMR][1000 genomes]
rs6588388	0.83[AMR][1000 genomes]
rs6588389	0.88[AMR][1000 genomes]
rs6664392	0.84[AMR][1000 genomes]
rs6664496	0.84[AMR][1000 genomes]
rs6669799	0.86[AMR][1000 genomes]
rs7512729	0.84[AMR][1000 genomes]
rs7522639	0.87[AMR][1000 genomes]
rs7545399	0.84[AMR][1000 genomes]
rs7547893	0.83[AMR][1000 genomes]
rs9633421	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763300	chr1:47358532-47628774	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv916813	chr1:47435635-47666179	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv870705	chr1:47533705-47620126	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv871010	chr1:47533705-47637999	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv870899	chr1:47548974-47637999	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv945929	chr1:47578751-47617495	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47574800-47586400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:47579000-47586800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:47579000-47586800	Weak transcription	H1 Cell Line	embryonic stem cell

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