Variant report

Variant	rs4610362
Chromosome Location	chr4:76514964-76514965
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:76514642..76516706-chr4:76516888..76519170,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10856853	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11097041	0.87[EUR][1000 genomes]
rs11556146	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11723767	0.86[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11729174	0.90[ASN][1000 genomes]
rs11935073	1.00[JPT][hapmap]
rs12498415	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes]
rs16996019	0.92[JPT][hapmap]
rs17000786	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs17000794	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs17000864	0.82[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs17215400	0.86[EUR][1000 genomes]
rs17280714	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2089253	0.82[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs324703	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs324714	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs324719	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs324723	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs324733	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs324735	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs4262008	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6531816	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs6816990	0.87[EUR][1000 genomes]
rs6850797	0.87[EUR][1000 genomes]
rs6851487	0.87[EUR][1000 genomes]
rs6856162	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7663617	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879495	chr4:76493256-76585823	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv879496	chr4:76493256-76620803	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4610362	CXCL10	cis	parietal	SCAN
rs4610362	DLK2	trans	cerebellum	SCAN
rs4610362	SCARB2	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76504400-76535200	Weak transcription	Aorta	Aorta
2	chr4:76504800-76526800	Weak transcription	Fetal Brain Female	brain
3	chr4:76508000-76524800	Weak transcription	Brain Angular Gyrus	brain
4	chr4:76509600-76532200	Weak transcription	Lung	lung
5	chr4:76509800-76530600	Weak transcription	Brain Anterior Caudate	brain
6	chr4:76510000-76524800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr4:76512600-76516600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr4:76512600-76527000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr4:76514800-76527200	Weak transcription	Brain Inferior Temporal Lobe	brain

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