Variant report

Variant	rs4610544
Chromosome Location	chr6:68077185-68077186
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:40565910..40566852-chr6:68076614..68077483,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000172888	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs13200476	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13200842	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13201396	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13204158	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13205204	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13212110	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13212494	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13217870	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13218112	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34164578	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34249322	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34785546	0.95[EUR][1000 genomes]
rs34963995	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34977905	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35009715	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35160567	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35806700	0.95[EUR][1000 genomes]
rs35845566	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35936386	0.95[EUR][1000 genomes]
rs36032174	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs36050045	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36109920	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4394193	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4518480	0.86[ASN][1000 genomes]
rs4590251	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56834935	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61354412	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6901320	1.00[ASN][1000 genomes]
rs71555346	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71555347	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73743365	0.93[EUR][1000 genomes]
rs73743366	0.94[EUR][1000 genomes]
rs73743380	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886070	chr6:67488983-68094791	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv886085	chr6:67702591-68140783	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3418797	chr6:67772134-68314069	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1027923	chr6:67830533-68828337	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv1016471	chr6:67854363-68708368	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv538292	chr6:67854363-68708368	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv886097	chr6:67935071-68298216	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv603589	chr6:67975166-68865718	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv603590	chr6:68024291-68079700	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv886098	chr6:68030203-68140783	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv886099	chr6:68030203-68186228	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv886100	chr6:68033877-68186228	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv463142	chr6:68065040-68102319	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
14	nsv603591	chr6:68065040-68102319	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
15	nsv886101	chr6:68068259-68156538	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
16	nsv886102	chr6:68068259-68186228	Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
17	nsv886103	chr6:68068259-68200464	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
18	nsv886104	chr6:68068259-68207105	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
19	nsv886105	chr6:68068259-68339132	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
20	nsv886106	chr6:68072138-68186228	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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