Variant report

Variant	rs4612945
Chromosome Location	chr13:70552413-70552414
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs17085738	0.85[CHB][hapmap]
rs17085746	0.85[CHB][hapmap]
rs17085756	0.85[CHB][hapmap]
rs17085765	0.85[CHB][hapmap];0.82[CHD][hapmap]
rs17085771	0.85[CHB][hapmap]
rs17085776	0.85[CHB][hapmap];0.82[CHD][hapmap]
rs17085785	0.85[CHB][hapmap]
rs17085791	0.85[CHB][hapmap]
rs17085809	0.85[CHB][hapmap]
rs17085818	0.84[CHB][hapmap]
rs17086052	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1888899	0.85[CHB][hapmap]
rs2150960	0.85[CHB][hapmap];0.82[CHD][hapmap]
rs2210443	0.83[ASW][hapmap];0.87[LWK][hapmap];0.89[YRI][hapmap]
rs2210444	0.89[YRI][hapmap]
rs2210448	0.85[CHB][hapmap]
rs2210449	0.85[CHB][hapmap]
rs2210451	0.85[CHB][hapmap];0.82[CHD][hapmap]
rs4519225	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4559808	0.83[ASW][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap]
rs7325506	0.89[YRI][hapmap]
rs7332166	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7337151	0.84[CHB][hapmap]
rs7337863	0.84[CHB][hapmap]
rs7338117	0.84[CHB][hapmap]
rs7491555	0.90[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7999570	0.86[YRI][hapmap]
rs7999936	0.86[YRI][hapmap]
rs8000924	0.84[CHB][hapmap];0.87[CHD][hapmap]
rs9788409	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900481	chr13:70147851-70560731	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv530724	chr13:70393680-71164323	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1045918	chr13:70409675-70615997	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1038695	chr13:70484098-70654204	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv900488	chr13:70487282-70560731	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv900489	chr13:70487282-70578306	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv900491	chr13:70499394-70578306	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv900492	chr13:70508163-70560731	Flanking Active TSS Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv900493	chr13:70508163-70578306	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv530606	chr13:70510296-70780461	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:70552200-70552600	Active TSS	Hela-S3	cervix

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