Variant report

Variant	rs4616280
Chromosome Location	chr16:81864913-81864914
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:81863202..81865359-chr16:81868245..81871307,3	MCF-7	breast:
2	chr16:81860692..81862847-chr16:81863459..81865538,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12445050	0.92[ASN][1000 genomes]
rs13334290	0.90[ASN][1000 genomes]
rs13335344	0.90[ASN][1000 genomes]
rs13338037	0.90[ASN][1000 genomes]
rs13339274	0.90[ASN][1000 genomes]
rs28734133	0.92[ASN][1000 genomes]
rs4547325	0.97[ASN][1000 genomes]
rs62044136	0.95[ASN][1000 genomes]
rs62044137	0.92[ASN][1000 genomes]
rs62044141	0.97[ASN][1000 genomes]
rs62044142	0.90[ASN][1000 genomes]
rs62045701	0.90[ASN][1000 genomes]
rs62045702	0.90[ASN][1000 genomes]
rs62045704	0.90[ASN][1000 genomes]
rs62045706	0.82[ASN][1000 genomes]
rs6564923	0.90[ASN][1000 genomes]
rs7196980	0.90[ASN][1000 genomes]
rs74029252	0.90[ASN][1000 genomes]
rs8047437	0.97[ASN][1000 genomes]
rs8182116	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
2	nsv573365	chr16:81804972-81975892	Strong transcription Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1061544	chr16:81834313-81877375	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81850800-81868200	Weak transcription	Esophagus	oesophagus
2	chr16:81855600-81865000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr16:81857200-81865200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr16:81857200-81866400	Weak transcription	Right Atrium	heart
5	chr16:81857200-81867400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr16:81858800-81867400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr16:81858800-81878800	Weak transcription	Fetal Intestine Small	intestine
8	chr16:81861000-81865000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr16:81861600-81871800	Enhancers	Primary hematopoietic stem cells	blood
10	chr16:81862200-81865200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr16:81862400-81865600	Weak transcription	Placenta	Placenta
12	chr16:81862600-81865200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr16:81863400-81865200	Enhancers	Lung	lung
14	chr16:81863800-81865000	Enhancers	Primary T cells fromperipheralblood	blood
15	chr16:81864400-81865000	Enhancers	Duodenum Mucosa	Duodenum
16	chr16:81864400-81865800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr16:81864400-81866200	Flanking Active TSS	Primary B cells from cord blood	blood
18	chr16:81864400-81866400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
19	chr16:81864400-81866400	Enhancers	Colonic Mucosa	Colon
20	chr16:81864400-81866600	Enhancers	Spleen	Spleen
21	chr16:81864400-81866800	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr16:81864400-81866800	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
23	chr16:81864400-81867000	Enhancers	Fetal Thymus	thymus
24	chr16:81864600-81865800	Active TSS	Rectal Mucosa Donor 29	rectum
25	chr16:81864600-81866800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
26	chr16:81864600-81866800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
27	chr16:81864600-81867600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
28	chr16:81864600-81869600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr16:81864800-81865200	Enhancers	Pancreas	Pancrea
30	chr16:81864800-81865400	Transcr. at gene 5' and 3'	Primary B cells from peripheral blood	blood
31	chr16:81864800-81865400	Active TSS	Rectal Smooth Muscle	rectum
32	chr16:81864800-81865800	Enhancers	H9 Cell Line	embryonic stem cell
33	chr16:81864800-81865800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr16:81864800-81865800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
35	chr16:81864800-81866200	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr16:81864800-81866200	Enhancers	Thymus	Thymus
37	chr16:81864800-81866800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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