Variant report

Variant	rs4625567
Chromosome Location	chr12:31954469-31954470
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs12811651	0.81[AMR][1000 genomes]
rs12814855	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12815174	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12817263	0.81[AMR][1000 genomes]
rs12823413	0.84[AMR][1000 genomes]
rs12823752	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12825094	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12825723	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12826558	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17566497	0.84[AMR][1000 genomes]
rs17568410	0.87[AMR][1000 genomes]
rs2388970	0.87[AMR][1000 genomes]
rs34044630	0.87[AMR][1000 genomes]
rs34065684	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34095810	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34121037	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34184907	0.81[AMR][1000 genomes]
rs34353104	0.90[AMR][1000 genomes]
rs34353434	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34580801	0.84[AMR][1000 genomes]
rs34777422	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34943554	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35147828	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35169933	0.84[AMR][1000 genomes]
rs35376742	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35622927	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35774037	0.84[AMR][1000 genomes]
rs35869118	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36058687	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs36064527	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36084850	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36123158	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4930990	0.84[AMR][1000 genomes]
rs4930991	0.84[AMR][1000 genomes]
rs4930993	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4931556	0.84[AMR][1000 genomes]
rs4931569	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4931573	0.84[AMR][1000 genomes]
rs4931574	0.81[AMR][1000 genomes]
rs4931576	0.84[AMR][1000 genomes]
rs55924094	0.84[AMR][1000 genomes]
rs66550728	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67164469	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67774974	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7133506	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71455687	0.84[AMR][1000 genomes]
rs7303032	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73074046	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73075914	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73075931	0.84[AMR][1000 genomes]
rs73075968	0.84[AMR][1000 genomes]
rs7967020	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7976933	0.84[AMR][1000 genomes]
rs7977460	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7977871	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7977983	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043010	chr12:31798446-32143151	ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv541446	chr12:31798446-32143151	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3432694	chr12:31801467-32109828	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv558100	chr12:31866833-32185924	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv1045464	chr12:31869888-32183792	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv541447	chr12:31869888-32183792	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
7	esv3363806	chr12:31872264-32410283	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
8	esv3508621	chr12:31872654-32410593	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
9	esv3508622	chr12:31872654-32410593	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
10	nsv558101	chr12:31876666-32006563	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
11	nsv8940	chr12:31899904-31987363	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
12	nsv522362	chr12:31929771-31981293	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
13	nsv558138	chr12:31929771-31981293	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
14	nsv975626	chr12:31937678-31972436	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
15	nsv663	chr12:31941989-31986608	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
16	nsv519112	chr12:31944985-31957381	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
17	esv2762970	chr12:31950446-31960715	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
18	esv3495852	chr12:31951085-31955583	Active TSS ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
19	esv3495829	chr12:31951632-31954742	Weak transcription ZNF genes & repeats Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
20	nsv512262	chr12:31951784-31954498	Weak transcription Enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
21	esv3495841	chr12:31952082-31954575	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
22	esv3495863	chr12:31952160-31954509	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:31942800-31956600	Weak transcription	Primary B cells from peripheral blood	blood
2	chr12:31950600-31956600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr12:31950600-31956600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr12:31950800-31956200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr12:31950800-31956800	Weak transcription	Dnd41	blood
6	chr12:31951000-31954600	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr12:31951000-31955000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr12:31951200-31954800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr12:31951200-31955000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr12:31951200-31955000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr12:31951400-31956800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr12:31953600-31956000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr12:31954200-31954800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
14	chr12:31954400-31954600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr12:31954400-31954800	Weak transcription	Primary T cells from cord blood	blood
16	chr12:31954400-31955600	Enhancers	Primary T helper cells fromperipheralblood	blood

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