Variant report

Variant	rs4625979
Chromosome Location	chr20:41070197-41070198
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1467393	0.88[CEU][hapmap];0.83[CHB][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3890324	0.87[CEU][hapmap];0.82[CHB][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4610115	0.91[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv833987	chr20:41007663-41184914	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41069600-41070400	Enhancers	Brain Germinal Matrix	brain
2	chr20:41069600-41072400	Enhancers	Fetal Brain Male	brain
3	chr20:41069800-41072200	Enhancers	Fetal Brain Female	brain
4	chr20:41069800-41072600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr20:41069800-41072600	Enhancers	Fetal Muscle Leg	muscle
6	chr20:41070000-41070200	Enhancers	Brain Cingulate Gyrus	brain
7	chr20:41070000-41070800	Enhancers	Fetal Muscle Trunk	muscle
8	chr20:41070000-41072000	Enhancers	HSMM	muscle
9	chr20:41070000-41072400	Enhancers	Adipose Nuclei	Adipose
10	chr20:41070000-41077800	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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