Variant report

Variant	rs4626180
Chromosome Location	chr4:148867317-148867318
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10213616	0.84[AFR][1000 genomes]
rs6815620	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv880243	chr4:148735644-148879583	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv880244	chr4:148764252-148920089	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1029845	chr4:148766290-148916437	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1030001	chr4:148773479-148916437	Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1017904	chr4:148814133-148975348	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1024596	chr4:148830472-148886915	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148797400-148879600	Weak transcription	Gastric	stomach
2	chr4:148826600-148888200	Weak transcription	Fetal Thymus	thymus
3	chr4:148833600-148877400	Weak transcription	Small Intestine	intestine
4	chr4:148835000-148869000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr4:148847400-148877200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr4:148849200-148875600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr4:148850000-148876400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:148850200-148890800	Weak transcription	HUVEC	blood vessel
9	chr4:148855400-148868600	Weak transcription	Fetal Intestine Small	intestine
10	chr4:148855400-148884800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr4:148856400-148889000	Weak transcription	Placenta	Placenta
12	chr4:148859400-148898000	Weak transcription	Duodenum Mucosa	Duodenum
13	chr4:148859800-148878600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr4:148860600-148869400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr4:148860800-148879200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr4:148861800-148868600	Weak transcription	Right Ventricle	heart
17	chr4:148861800-148878400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr4:148861800-148883000	Weak transcription	Lung	lung
19	chr4:148861800-148883000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr4:148861800-148884800	Weak transcription	Esophagus	oesophagus
21	chr4:148861800-148885400	Weak transcription	Pancreas	Pancrea
22	chr4:148861800-148890800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr4:148862000-148878400	Weak transcription	Fetal Heart	heart
24	chr4:148862000-148879200	Weak transcription	Psoas Muscle	Psoas
25	chr4:148862800-148887800	Weak transcription	Fetal Intestine Large	intestine
26	chr4:148864200-148867800	Weak transcription	NHDF-Ad	bronchial
27	chr4:148864200-148868200	Strong transcription	HSMM	muscle
28	chr4:148864200-148877000	Weak transcription	Rectal Smooth Muscle	rectum
29	chr4:148864200-148887200	Weak transcription	NHLF	lung
30	chr4:148864400-148873000	Weak transcription	Fetal Kidney	kidney
31	chr4:148864400-148896800	Weak transcription	Osteobl	bone
32	chr4:148864600-148868200	Weak transcription	Colon Smooth Muscle	Colon
33	chr4:148864600-148876800	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr4:148864800-148891200	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr4:148865000-148879400	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr4:148865400-148873400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr4:148865400-148879400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr4:148865600-148871400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr4:148865800-148867600	Strong transcription	Left Ventricle	heart
40	chr4:148865800-148870000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr4:148865800-148871000	Strong transcription	Stomach Smooth Muscle	stomach
42	chr4:148865800-148873000	Strong transcription	Fetal Muscle Leg	muscle
43	chr4:148866000-148867400	Strong transcription	Aorta	Aorta
44	chr4:148866000-148867400	Strong transcription	HSMMtube	muscle
45	chr4:148866000-148867600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr4:148866000-148867600	Strong transcription	Fetal Muscle Trunk	muscle
47	chr4:148866000-148868200	Strong transcription	Muscle Satellite Cultured Cells	--
48	chr4:148866000-148868400	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr4:148866000-148870600	Strong transcription	Ovary	ovary
50	chr4:148866000-148873600	Strong transcription	Adipose Nuclei	Adipose

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