Variant report

Variant	rs4627301
Chromosome Location	chr15:75325319-75325320
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75314427..75332274-chr15:75491598..75502885,56	MCF-7	breast:
2	chr15:75324819..75327549-chr15:75491862..75495689,3	MCF-7	breast:
3	chr15:75325092..75330336-chr15:75334104..75338099,7	K562	blood:
4	chr15:75325092..75329638-chr15:75334104..75337267,7	K562	blood:
5	chr15:75314737..75326433-chr15:75490770..75500610,30	K562	blood:
6	chr15:75312886..75327225-chr15:75491522..75500922,36	K562	blood:
7	chr15:75315943..75317493-chr15:75324796..75326632,2	K562	blood:

Variant related genes	Relation type
ENSG00000167173	Chromatin interaction
ENSG00000138621	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12050820	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs12593566	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12900654	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12909515	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12912959	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs17422130	0.86[EUR][1000 genomes]
rs1867151	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2083730	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs3812944	0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4886651	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4886652	0.86[AFR][1000 genomes]
rs59307715	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6495139	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6495141	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6495143	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6495152	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75316600-75336800	Weak transcription	Fetal Brain Female	brain
2	chr15:75316800-75338800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:75317200-75335000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr15:75318000-75341400	Weak transcription	Brain Germinal Matrix	brain
5	chr15:75321400-75326600	Enhancers	Primary B cells from cord blood	blood
6	chr15:75321800-75326600	Enhancers	Fetal Thymus	thymus
7	chr15:75322000-75326600	Enhancers	Placenta	Placenta
8	chr15:75322200-75327200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr15:75322200-75328200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr15:75322200-75330200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr15:75322200-75333400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr15:75322200-75335400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr15:75322200-75335400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr15:75322200-75339000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr15:75322400-75328000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr15:75322400-75336800	Weak transcription	Primary T cells from cord blood	blood
17	chr15:75322400-75339200	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr15:75322600-75326600	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr15:75322600-75328400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr15:75322600-75330200	Weak transcription	NH-A	brain
21	chr15:75322600-75338600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr15:75322800-75327400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr15:75322800-75329000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr15:75322800-75334200	Weak transcription	Brain Hippocampus Middle	brain
25	chr15:75322800-75335200	Weak transcription	Brain Anterior Caudate	brain
26	chr15:75322800-75335600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr15:75323000-75326000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr15:75323000-75326400	Weak transcription	Pancreas	Pancrea
29	chr15:75323000-75328400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr15:75323000-75328400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr15:75323000-75328400	Weak transcription	HSMM	muscle
32	chr15:75323000-75328600	Weak transcription	Colonic Mucosa	Colon
33	chr15:75323000-75330200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr15:75323000-75330600	Weak transcription	Psoas Muscle	Psoas
35	chr15:75323000-75334600	Weak transcription	Liver	Liver
36	chr15:75323000-75335000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr15:75323000-75335000	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr15:75323000-75335000	Weak transcription	Gastric	stomach
39	chr15:75323000-75335000	Weak transcription	NHLF	lung
40	chr15:75323000-75335200	Weak transcription	Brain Angular Gyrus	brain
41	chr15:75323000-75335400	Weak transcription	Aorta	Aorta
42	chr15:75323000-75335800	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr15:75323000-75336600	Weak transcription	Dnd41	blood
44	chr15:75323200-75325800	Enhancers	Adipose Nuclei	Adipose
45	chr15:75323200-75326200	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr15:75323200-75328200	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr15:75323200-75328600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr15:75323200-75331400	Weak transcription	Fetal Lung	lung
49	chr15:75323200-75334400	Weak transcription	NHDF-Ad	bronchial
50	chr15:75323400-75326000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links