Variant report

Variant	rs4629302
Chromosome Location	chr3:111519733-111519734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10451887	0.83[AMR][1000 genomes]
rs12108148	0.83[AMR][1000 genomes]
rs72949173	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111487800-111521000	Weak transcription	Gastric	stomach
2	chr3:111505400-111520600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:111509400-111525800	Weak transcription	Fetal Intestine Small	intestine
4	chr3:111510200-111522000	Weak transcription	Left Ventricle	heart
5	chr3:111513200-111521000	Weak transcription	Lung	lung
6	chr3:111513800-111521000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr3:111514600-111521000	Weak transcription	Fetal Stomach	stomach
8	chr3:111514600-111533200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:111515800-111520000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:111516600-111519800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:111518800-111520200	Enhancers	HepG2	liver
12	chr3:111518800-111520400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr3:111518800-111520600	Enhancers	A549	lung
14	chr3:111518800-111522000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:111518800-111522000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr3:111518800-111522200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:111518800-111522400	Enhancers	Liver	Liver
18	chr3:111518800-111523200	Enhancers	HMEC	breast
19	chr3:111518800-111523600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:111519000-111520400	Enhancers	Rectal Smooth Muscle	rectum
21	chr3:111519000-111520800	Enhancers	Muscle Satellite Cultured Cells	--
22	chr3:111519000-111521000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr3:111519000-111521600	Enhancers	Hela-S3	cervix
24	chr3:111519000-111522800	Enhancers	Adipose Nuclei	Adipose
25	chr3:111519000-111523400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:111519200-111522200	Weak transcription	Esophagus	oesophagus
27	chr3:111519200-111523200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr3:111519200-111526200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr3:111519200-111526400	Weak transcription	Pancreas	Pancrea
30	chr3:111519400-111520000	Enhancers	Fetal Intestine Large	intestine
31	chr3:111519400-111520200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr3:111519400-111521000	Enhancers	HSMM	muscle
33	chr3:111519400-111521000	Enhancers	NHDF-Ad	bronchial
34	chr3:111519400-111522200	Enhancers	Osteobl	bone
35	chr3:111519400-111522400	Enhancers	Fetal Lung	lung
36	chr3:111519600-111520200	Enhancers	Colon Smooth Muscle	Colon
37	chr3:111519600-111520400	Enhancers	HSMMtube	muscle
38	chr3:111519600-111520600	Weak transcription	NH-A	brain
39	chr3:111519600-111521000	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr3:111519600-111521000	Enhancers	NHEK	skin
41	chr3:111519600-111522400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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