Variant report

Variant	rs4632256
Chromosome Location	chr19:35579903-35579904
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:35576238..35588046-chr19:35602523..35611687,25	MCF-7	breast:
2	chr19:35572347..35575062-chr19:35578237..35581062,2	K562	blood:
3	chr19:35488725..35490801-chr19:35579690..35581562,2	MCF-7	breast:
4	chr19:35579665..35581490-chr19:35613218..35615753,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000089356	Chromatin interaction
ENSG00000089351	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1673002	0.82[EUR][1000 genomes]
rs7250814	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911611	chr19:35483679-35589920	Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv911612	chr19:35501051-35602498	Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
4	nsv911614	chr19:35570307-35648365	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases
5	nsv525108	chr19:35577870-35589920	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv911615	chr19:35577870-35648365	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
7	nsv911616	chr19:35577870-35669071	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35560600-35581600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr19:35572000-35582200	Enhancers	Primary B cells from peripheral blood	blood
3	chr19:35575200-35581000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr19:35575600-35581200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr19:35576200-35580600	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr19:35577400-35581200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr19:35577600-35581200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr19:35577800-35581200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr19:35577800-35581200	Weak transcription	Brain Anterior Caudate	brain
10	chr19:35577800-35581600	Weak transcription	Spleen	Spleen
11	chr19:35578200-35581200	Weak transcription	GM12878-XiMat	blood
12	chr19:35578800-35580000	Enhancers	Brain Angular Gyrus	brain
13	chr19:35578800-35580400	Enhancers	Placenta	Placenta
14	chr19:35579000-35580000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr19:35579000-35580000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr19:35579000-35580000	Enhancers	HSMM	muscle
17	chr19:35579000-35580000	Enhancers	NH-A	brain
18	chr19:35579000-35580000	Enhancers	NHDF-Ad	bronchial
19	chr19:35579000-35580200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr19:35579000-35580200	Enhancers	HMEC	breast
21	chr19:35579000-35580600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr19:35579000-35581000	Enhancers	Liver	Liver
23	chr19:35579200-35580000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr19:35579200-35580000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr19:35579200-35580000	Enhancers	Muscle Satellite Cultured Cells	--
26	chr19:35579200-35580000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr19:35579200-35580000	Enhancers	Fetal Muscle Leg	muscle
28	chr19:35579200-35580000	Enhancers	A549	lung
29	chr19:35579200-35580000	Enhancers	HSMMtube	muscle
30	chr19:35579200-35580000	Enhancers	NHEK	skin
31	chr19:35579200-35580000	Enhancers	NHLF	lung
32	chr19:35579200-35580000	Enhancers	Osteobl	bone
33	chr19:35579200-35580400	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr19:35579200-35580600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr19:35579200-35580600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr19:35579200-35580800	Enhancers	Stomach Mucosa	stomach
37	chr19:35579400-35580000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr19:35579400-35581200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr19:35579400-35581200	Weak transcription	Brain Hippocampus Middle	brain
40	chr19:35579600-35580000	Enhancers	Placenta Amnion	Placenta Amnion
41	chr19:35579600-35580400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr19:35579600-35581200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr19:35579800-35580800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr19:35579800-35581000	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr19:35579800-35581200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr19:35579800-35581200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr19:35579800-35581200	Weak transcription	Brain Cingulate Gyrus	brain
48	chr19:35579800-35581200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr19:35579800-35581200	Weak transcription	Brain Substantia Nigra	brain
50	chr19:35579800-35581200	Weak transcription	Fetal Intestine Small	intestine

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