Variant report

Variant	rs4632325
Chromosome Location	chr2:63533338-63533339
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 111 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10169209	0.82[EUR][1000 genomes]
rs10169292	0.83[EUR][1000 genomes]
rs10201254	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10207356	0.85[EUR][1000 genomes]
rs11125965	0.81[EUR][1000 genomes]
rs11675647	0.86[EUR][1000 genomes]
rs11684108	0.85[EUR][1000 genomes]
rs11686044	0.82[EUR][1000 genomes]
rs11691357	0.82[EUR][1000 genomes]
rs11691718	0.85[EUR][1000 genomes]
rs12151606	0.82[EUR][1000 genomes]
rs12612773	0.84[EUR][1000 genomes]
rs12623431	0.85[EUR][1000 genomes]
rs12713477	0.85[EUR][1000 genomes]
rs12713478	0.86[EUR][1000 genomes]
rs12992737	0.85[EUR][1000 genomes]
rs12994711	0.85[EUR][1000 genomes]
rs1400686	0.85[EUR][1000 genomes]
rs1400687	0.85[EUR][1000 genomes]
rs1400688	0.85[EUR][1000 genomes]
rs1517401	0.85[EUR][1000 genomes]
rs1517402	0.85[EUR][1000 genomes]
rs1517404	0.85[EUR][1000 genomes]
rs1517405	0.85[EUR][1000 genomes]
rs2030188	0.86[EUR][1000 genomes]
rs2030189	0.84[EUR][1000 genomes]
rs2030190	0.84[EUR][1000 genomes]
rs2090478	0.84[EUR][1000 genomes]
rs2090479	0.84[EUR][1000 genomes]
rs2421883	0.83[EUR][1000 genomes]
rs4313961	0.82[EUR][1000 genomes]
rs4353635	0.82[EUR][1000 genomes]
rs4429457	0.82[EUR][1000 genomes]
rs4560098	0.80[EUR][1000 genomes]
rs4578846	0.82[EUR][1000 genomes]
rs4602212	0.88[EUR][1000 genomes]
rs4613259	0.80[EUR][1000 genomes]
rs4671468	0.80[EUR][1000 genomes]
rs4671469	0.82[EUR][1000 genomes]
rs4671470	0.85[EUR][1000 genomes]
rs4671471	0.85[EUR][1000 genomes]
rs4671472	0.85[EUR][1000 genomes]
rs4671473	0.84[EUR][1000 genomes]
rs4671474	0.85[EUR][1000 genomes]
rs4671475	0.85[EUR][1000 genomes]
rs4671476	0.85[EUR][1000 genomes]
rs4671478	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4671479	0.84[EUR][1000 genomes]
rs4671480	0.84[EUR][1000 genomes]
rs4671481	0.84[EUR][1000 genomes]
rs4671482	0.83[EUR][1000 genomes]
rs4671483	0.82[EUR][1000 genomes]
rs4671484	0.82[EUR][1000 genomes]
rs4671485	0.83[EUR][1000 genomes]
rs62177761	0.83[EUR][1000 genomes]
rs62177762	0.82[EUR][1000 genomes]
rs62177774	0.82[EUR][1000 genomes]
rs62177783	0.82[EUR][1000 genomes]
rs62177793	0.84[EUR][1000 genomes]
rs62177797	0.84[EUR][1000 genomes]
rs62177820	0.84[EUR][1000 genomes]
rs62177821	0.84[EUR][1000 genomes]
rs6545985	0.80[EUR][1000 genomes]
rs6545986	0.85[EUR][1000 genomes]
rs6545988	0.89[EUR][1000 genomes]
rs6545989	0.84[EUR][1000 genomes]
rs6545991	0.83[EUR][1000 genomes]
rs6545992	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6545997	0.84[EUR][1000 genomes]
rs6704562	0.85[EUR][1000 genomes]
rs6705322	0.84[EUR][1000 genomes]
rs6706180	0.85[EUR][1000 genomes]
rs6706424	0.85[EUR][1000 genomes]
rs6708627	0.85[EUR][1000 genomes]
rs6708847	0.85[EUR][1000 genomes]
rs6709115	0.86[EUR][1000 genomes]
rs6711248	0.81[EUR][1000 genomes]
rs6713500	0.86[EUR][1000 genomes]
rs6714139	0.83[EUR][1000 genomes]
rs6714298	0.85[EUR][1000 genomes]
rs6719375	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6724044	0.85[EUR][1000 genomes]
rs6725694	0.85[EUR][1000 genomes]
rs6728844	0.82[EUR][1000 genomes]
rs6729132	0.85[EUR][1000 genomes]
rs6734468	0.85[EUR][1000 genomes]
rs6736788	0.84[EUR][1000 genomes]
rs6737820	0.85[EUR][1000 genomes]
rs6744720	0.85[EUR][1000 genomes]
rs6755183	0.85[EUR][1000 genomes]
rs6755412	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6757463	0.82[EUR][1000 genomes]
rs6757487	0.82[EUR][1000 genomes]
rs7558922	0.83[EUR][1000 genomes]
rs7559137	0.83[EUR][1000 genomes]
rs7561802	0.82[EUR][1000 genomes]
rs7567088	0.81[EUR][1000 genomes]
rs7570649	0.85[EUR][1000 genomes]
rs7582434	0.82[EUR][1000 genomes]
rs7585640	0.83[AMR][1000 genomes]
rs7591562	0.85[EUR][1000 genomes]
rs7599736	0.83[EUR][1000 genomes]
rs7605113	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417336	chr2:62957866-63749654	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1006848	chr2:63061816-63631407	Weak transcription Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv3340700	chr2:63127412-63534998	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1004678	chr2:63230722-63562484	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv535768	chr2:63413596-63631407	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1009191	chr2:63473443-63578508	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv834241	chr2:63490262-63668205	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4632325	WDPCP	cis	Adipose Subcutaneous	GTEx
rs4632325	MDH1	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63530600-63545800	Weak transcription	Primary T cells from cord blood	blood
2	chr2:63530800-63538400	Weak transcription	Pancreas	Pancrea
3	chr2:63530800-63541800	Weak transcription	Primary B cells from cord blood	blood
4	chr2:63531000-63541800	Weak transcription	Brain Angular Gyrus	brain
5	chr2:63531000-63571400	Weak transcription	Left Ventricle	heart
6	chr2:63531800-63537200	Weak transcription	Dnd41	blood
7	chr2:63532200-63543800	Weak transcription	Thymus	Thymus
8	chr2:63532200-63549800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr2:63532600-63539600	Weak transcription	Adipose Nuclei	Adipose
10	chr2:63532600-63544000	Weak transcription	Ovary	ovary

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