Variant report

Variant	rs4634159
Chromosome Location	chr3:110611002-110611003
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs55987847	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56039029	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58821178	0.93[EUR][1000 genomes]
rs61219682	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73851758	0.83[AFR][1000 genomes]
rs73851766	0.83[AFR][1000 genomes]
rs73852309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73852312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73852314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73852322	1.00[EUR][1000 genomes]
rs73852337	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73852350	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73852352	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73854205	0.83[AFR][1000 genomes]
rs7642664	1.00[CEU][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1014199	chr3:110293896-110754155	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110607800-110619600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:110608200-110618400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:110609400-110611400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
4	chr3:110611000-110612600	Strong transcription	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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