Variant report

Variant	rs4637328
Chromosome Location	chr3:142387809-142387810
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:142387225..142389939-chr3:142390380..142394474,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000199319	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2883380	0.81[CHB][hapmap]
rs4607150	0.80[CEU][hapmap]
rs4683690	0.81[CHB][hapmap]
rs9816377	0.95[CEU][hapmap];0.88[CHD][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes]
rs9843148	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[MKK][hapmap];0.81[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932989	chr3:142204208-142423305	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4637328	XRN1	cis	cerebellum	SCAN

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142366000-142435400	Weak transcription	Colonic Mucosa	Colon
2	chr3:142369400-142408400	Weak transcription	Pancreas	Pancrea
3	chr3:142371000-142393800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:142372600-142391200	Weak transcription	K562	blood
5	chr3:142376600-142388800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr3:142379200-142413000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:142380000-142390000	Weak transcription	Dnd41	blood
8	chr3:142380000-142390400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:142380000-142391800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:142380200-142388800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:142380200-142391000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr3:142382600-142400400	Weak transcription	Gastric	stomach
13	chr3:142383200-142388800	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr3:142384400-142388800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr3:142384400-142388800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr3:142384400-142389000	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr3:142384400-142389000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr3:142384400-142389000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr3:142384400-142411400	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr3:142384600-142392400	Weak transcription	HepG2	liver
21	chr3:142384800-142388200	Weak transcription	Duodenum Mucosa	Duodenum
22	chr3:142384800-142390400	Weak transcription	Primary hematopoietic stem cells	blood
23	chr3:142384800-142403000	Weak transcription	Liver	Liver
24	chr3:142385000-142389400	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr3:142385200-142391800	Weak transcription	Fetal Intestine Large	intestine
26	chr3:142385800-142391200	Weak transcription	Fetal Intestine Small	intestine
27	chr3:142385800-142415400	Weak transcription	A549	lung
28	chr3:142386400-142411800	Weak transcription	NHEK	skin
29	chr3:142387400-142388200	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr3:142387400-142401800	Weak transcription	Aorta	Aorta
31	chr3:142387400-142404200	Weak transcription	Small Intestine	intestine
32	chr3:142387400-142413400	Weak transcription	Stomach Mucosa	stomach

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