Variant report

Variant	rs4637711
Chromosome Location	chr7:16436786-16436787
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:16431599..16434211-chr7:16436454..16438200,2	K562	blood:
2	chr7:16423939..16426216-chr7:16434967..16437061,2	K562	blood:
3	chr7:16435726..16438390-chr7:16620305..16622722,2	K562	blood:
4	chr7:16436062..16438376-chr7:16440811..16443657,2	K562	blood:
5	chr7:16427726..16430162-chr7:16435410..16438091,2	MCF-7	breast:
6	chr7:16304973..16307091-chr7:16435445..16437043,2	K562	blood:
7	chr7:16431022..16434211-chr7:16436122..16439402,3	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10224376	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10230422	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10243957	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10243958	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10249194	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10249463	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10249467	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10252363	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10256679	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10261299	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10263566	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10265000	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10273509	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11972185	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11973206	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17169442	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17169450	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17169467	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17169469	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2178600	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2389637	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4351323	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4530922	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4721495	0.88[AMR][1000 genomes]
rs57386004	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57751249	0.83[AMR][1000 genomes]
rs57864877	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58419085	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58989277	0.83[AMR][1000 genomes]
rs6960236	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73291276	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73291285	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73306450	0.88[AMR][1000 genomes]
rs73306454	0.88[AMR][1000 genomes]
rs73306479	0.88[AMR][1000 genomes]
rs73306498	0.88[AMR][1000 genomes]
rs73306499	0.88[AMR][1000 genomes]
rs73308411	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73308428	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7350036	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7778635	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7793920	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7801162	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9886310	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv2759514	chr7:16236162-16527390	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv2758105	chr7:16272822-16527390	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	esv2757215	chr7:16346139-16458474	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv508447	chr7:16360614-16446053	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1031019	chr7:16377519-16458474	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1028556	chr7:16404615-16440024	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv523408	chr7:16413481-16438357	Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1034151	chr7:16415497-16578081	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
10	esv3430641	chr7:16435227-16441525	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3340751	chr7:16435327-16441325	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16417600-16436800	Weak transcription	Right Ventricle	heart
2	chr7:16432600-16439600	Weak transcription	Ovary	ovary
3	chr7:16432800-16436800	Weak transcription	Pancreas	Pancrea
4	chr7:16434400-16459000	Weak transcription	Stomach Mucosa	stomach
5	chr7:16435200-16442800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:16435600-16437200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:16435800-16439600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr7:16435800-16440600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:16435800-16444400	ZNF genes & repeats	K562	blood
10	chr7:16436000-16440200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
11	chr7:16436200-16440400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
12	chr7:16436200-16440400	ZNF genes & repeats	Fetal Lung	lung
13	chr7:16436200-16443600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
14	chr7:16436400-16440000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
15	chr7:16436400-16440000	ZNF genes & repeats	Brain Angular Gyrus	brain
16	chr7:16436400-16440200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:16436400-16440400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
18	chr7:16436400-16440400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
19	chr7:16436400-16440400	ZNF genes & repeats	Fetal Brain Male	brain
20	chr7:16436400-16440400	ZNF genes & repeats	Fetal Heart	heart
21	chr7:16436400-16440400	ZNF genes & repeats	Fetal Kidney	kidney
22	chr7:16436400-16440600	ZNF genes & repeats	Fetal Muscle Leg	muscle
23	chr7:16436600-16439600	ZNF genes & repeats	Gastric	stomach
24	chr7:16436600-16440000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
25	chr7:16436600-16440000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
26	chr7:16436600-16440000	ZNF genes & repeats	Dnd41	blood
27	chr7:16436600-16440200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
28	chr7:16436600-16440400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr7:16436600-16440400	ZNF genes & repeats	Esophagus	oesophagus
30	chr7:16436600-16440400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood

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