Variant report

Variant	rs4640692
Chromosome Location	chr4:78089906-78089907
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:78089519..78092376-chr4:78099146..78100867,2	MCF-7	breast:
2	chr4:78085870..78089937-chr4:78095551..78099001,4	MCF-7	breast:
3	chr4:78089133..78091106-chr4:78093966..78096748,3	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10026646	0.91[ASN][1000 genomes]
rs11724432	0.80[ASN][1000 genomes]
rs12498388	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28648488	0.89[ASN][1000 genomes]
rs4150106	0.91[ASN][1000 genomes]
rs6849124	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6849534	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879500	chr4:78045960-78115334	Genic enhancers Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78080000-78092800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:78080000-78093400	Weak transcription	Right Ventricle	heart
3	chr4:78080200-78094400	Weak transcription	Psoas Muscle	Psoas
4	chr4:78080400-78090800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr4:78080400-78091400	Strong transcription	HUES6 Cell Line	embryonic stem cell
6	chr4:78080400-78092400	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr4:78080600-78091800	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:78080600-78091800	Strong transcription	Osteobl	bone
9	chr4:78080800-78091000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr4:78080800-78091400	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr4:78080800-78092400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:78081000-78090600	Strong transcription	H1 Cell Line	embryonic stem cell
13	chr4:78081200-78092000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr4:78081200-78092200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr4:78081200-78092400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr4:78081200-78092400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr4:78081200-78092400	Strong transcription	Placenta	Placenta
18	chr4:78081200-78092400	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr4:78081200-78092600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr4:78081200-78092600	Strong transcription	Fetal Muscle Trunk	muscle
21	chr4:78081200-78093000	Strong transcription	Primary hematopoietic stem cells	blood
22	chr4:78081200-78093600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr4:78081400-78092600	Strong transcription	Primary neutrophils fromperipheralblood	blood
24	chr4:78081600-78090200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr4:78081800-78091000	Strong transcription	Skeletal Muscle Female	skeletal muscle
26	chr4:78081800-78091800	Strong transcription	Adipose Nuclei	Adipose
27	chr4:78081800-78092400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr4:78082000-78090000	Strong transcription	Fetal Muscle Leg	muscle
29	chr4:78082200-78092000	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr4:78082600-78090600	Strong transcription	HSMMtube	muscle
31	chr4:78083000-78092000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr4:78083000-78092200	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr4:78083000-78092400	Strong transcription	Stomach Smooth Muscle	stomach
34	chr4:78083200-78090600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr4:78083200-78093600	Weak transcription	Small Intestine	intestine
36	chr4:78083400-78091800	Strong transcription	GM12878-XiMat	blood
37	chr4:78083400-78093000	Weak transcription	Fetal Heart	heart
38	chr4:78083400-78093600	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr4:78083400-78095600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr4:78083400-78095600	Weak transcription	HepG2	liver
41	chr4:78084400-78091000	Strong transcription	Sigmoid Colon	Sigmoid Colon
42	chr4:78084400-78091200	Weak transcription	Fetal Intestine Small	intestine
43	chr4:78084400-78092400	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr4:78084600-78090000	Weak transcription	Lung	lung
45	chr4:78084600-78090400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr4:78084600-78090400	Strong transcription	HMEC	breast
47	chr4:78084600-78097800	Weak transcription	Esophagus	oesophagus
48	chr4:78084600-78102200	Weak transcription	Spleen	Spleen
49	chr4:78084800-78091600	Strong transcription	Dnd41	blood
50	chr4:78084800-78092400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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