Variant report

Variant	rs4641655
Chromosome Location	chr14:78249475-78249476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10134425	0.92[ASN][1000 genomes]
rs10138747	1.00[ASN][1000 genomes]
rs10139492	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10143249	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10143294	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10144448	0.98[ASN][1000 genomes]
rs10146255	1.00[ASN][1000 genomes]
rs10483885	0.89[ASN][1000 genomes]
rs114763	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11621719	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11622761	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11624103	0.82[AMR][1000 genomes]
rs11624118	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11628838	0.83[AMR][1000 genomes]
rs11846215	0.95[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12879880	0.91[ASN][1000 genomes]
rs12880840	0.83[EUR][1000 genomes]
rs12887313	1.00[ASN][1000 genomes]
rs12890828	0.92[ASN][1000 genomes]
rs1477263	0.98[ASN][1000 genomes]
rs1477264	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs176941	0.90[ASN][1000 genomes]
rs176947	0.85[ASN][1000 genomes]
rs176948	0.90[ASN][1000 genomes]
rs176954	0.90[ASN][1000 genomes]
rs176956	0.90[ASN][1000 genomes]
rs176959	0.90[ASN][1000 genomes]
rs176961	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs176963	0.92[ASN][1000 genomes]
rs176964	0.92[ASN][1000 genomes]
rs176965	0.92[ASN][1000 genomes]
rs176968	0.92[ASN][1000 genomes]
rs176969	0.92[ASN][1000 genomes]
rs176970	0.92[ASN][1000 genomes]
rs176972	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs176975	0.92[ASN][1000 genomes]
rs176976	0.92[ASN][1000 genomes]
rs176977	0.88[ASN][1000 genomes]
rs2080703	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2111831	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2267756	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2267762	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2267763	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2267764	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2277917	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2284233	0.87[ASN][1000 genomes]
rs2284234	0.89[ASN][1000 genomes]
rs2284235	0.89[ASN][1000 genomes]
rs3783981	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3783982	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4899670	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4899673	0.89[ASN][1000 genomes]
rs4899674	0.94[ASN][1000 genomes]
rs4903627	0.83[AMR][1000 genomes]
rs4903638	0.98[ASN][1000 genomes]
rs4903644	0.84[EUR][1000 genomes]
rs61992863	0.87[AMR][1000 genomes]
rs61992864	0.86[AMR][1000 genomes]
rs61992867	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61992868	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6574392	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6574394	0.95[ASN][1000 genomes]
rs6574399	0.98[ASN][1000 genomes]
rs7141469	0.85[AMR][1000 genomes]
rs7142262	0.83[AMR][1000 genomes]
rs7143075	0.84[AMR][1000 genomes]
rs7143926	0.89[ASN][1000 genomes]
rs7145717	0.98[ASN][1000 genomes]
rs7148078	0.97[ASN][1000 genomes]
rs7148126	0.85[ASN][1000 genomes]
rs7150531	0.98[ASN][1000 genomes]
rs7151685	0.98[ASN][1000 genomes]
rs7154571	0.89[ASN][1000 genomes]
rs7160355	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs717682	0.98[ASN][1000 genomes]
rs759713	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8010541	0.95[ASN][1000 genomes]
rs8015645	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8022516	0.94[ASN][1000 genomes]
rs9323649	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9323651	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758362	chr14:78074180-78262572	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv2759998	chr14:78074180-78262572	Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1043788	chr14:78178490-78381190	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	esv2754594	chr14:78222798-78275549	Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
5	esv3512735	chr14:78248572-78253007	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3512736	chr14:78248572-78253007	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
7	esv2527141	chr14:78249088-78250974	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv993003	chr14:78249436-78250223	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78248800-78252000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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