Variant report

Variant	rs4642495
Chromosome Location	chr6:141772609-141772610
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10457719	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11155174	0.86[ASN][1000 genomes]
rs11155175	0.86[ASN][1000 genomes]
rs11155176	0.86[ASN][1000 genomes]
rs11155177	0.86[ASN][1000 genomes]
rs11155179	0.86[ASN][1000 genomes]
rs11155180	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11155181	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12193177	0.85[ASN][1000 genomes]
rs12201956	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12211503	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12211542	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212395	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1414123	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34398753	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34685832	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9688985	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019459	chr6:141051249-141862727	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538453	chr6:141051249-141862727	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv532070	chr6:141057326-141865359	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1025922	chr6:141090901-141865360	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv538454	chr6:141090901-141865360	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1029550	chr6:141372610-142029669	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv886727	chr6:141610933-141793547	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1015835	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv538455	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	esv2755719	chr6:141721907-142123546	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:141771000-141773600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr6:141771200-141772800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:141771200-141772800	Enhancers	NHDF-Ad	bronchial
4	chr6:141771200-141773000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:141771200-141773000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:141771200-141773400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr6:141771200-141773600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr6:141771200-141773800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr6:141771200-141774000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr6:141771400-141773400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:141771600-141774200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:141771800-141773600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:141771800-141774000	Enhancers	HUVEC	blood vessel
14	chr6:141772000-141773800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:141772000-141774000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:141772000-141774000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:141772000-141774000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:141772000-141774000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:141772000-141774000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:141772000-141774000	Enhancers	Placenta Amnion	Placenta Amnion
21	chr6:141772000-141774000	Enhancers	HMEC	breast
22	chr6:141772000-141774000	Enhancers	HSMM	muscle
23	chr6:141772000-141774000	Enhancers	NH-A	brain
24	chr6:141772000-141774000	Enhancers	NHEK	skin
25	chr6:141772000-141774000	Enhancers	Osteobl	bone
26	chr6:141772200-141773600	Enhancers	A549	lung
27	chr6:141772200-141774000	Enhancers	Hela-S3	cervix
28	chr6:141772200-141774000	Enhancers	HSMMtube	muscle
29	chr6:141772200-141774000	Enhancers	NHLF	lung
30	chr6:141772400-141772800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr6:141772400-141773000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr6:141772400-141773000	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr6:141772400-141773200	Enhancers	H9 Cell Line	embryonic stem cell
34	chr6:141772400-141773200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
35	chr6:141772400-141773200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr6:141772400-141773200	Enhancers	Right Atrium	heart
37	chr6:141772400-141773400	Enhancers	H1 Cell Line	embryonic stem cell
38	chr6:141772400-141773600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr6:141772400-141773800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:141772400-141774200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:141772600-141773000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
42	chr6:141772600-141773000	Enhancers	Psoas Muscle	Psoas
43	chr6:141772600-141773000	Enhancers	Skeletal Muscle Female	skeletal muscle

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