Variant report

Variant	rs4642889
Chromosome Location	chr1:221221795-221221796
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10863577	0.89[AFR][1000 genomes]
rs12125058	0.81[ASN][1000 genomes]
rs7416455	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873199	chr1:221136672-221451217	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221218600-221221800	Enhancers	Primary hematopoietic stem cells	blood
2	chr1:221218800-221222800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr1:221220000-221221800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr1:221220200-221221800	Enhancers	Placenta	Placenta
5	chr1:221220400-221221800	Enhancers	Lung	lung
6	chr1:221220600-221221800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr1:221220600-221221800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr1:221221000-221222000	Enhancers	Primary B cells from cord blood	blood
9	chr1:221221000-221222200	Enhancers	Primary B cells from peripheral blood	blood
10	chr1:221221200-221221800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr1:221221400-221222400	Weak transcription	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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