Variant report

Variant	rs4643257
Chromosome Location	chr15:56107486-56107487
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10152287	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11071220	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11071221	0.93[ASN][1000 genomes]
rs11071222	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12591460	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12593682	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12906740	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12907893	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs13379569	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13379578	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13380061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1991406	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28622576	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28685000	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4286058	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4456441	0.88[AFR][1000 genomes]
rs56014318	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56239222	0.97[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs8029107	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8030464	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8035637	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9944190	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9944212	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9944213	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9944218	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833017	chr15:55965957-56157912	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv3366380	chr15:56003224-56141650	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56095800-56128600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:56106000-56131200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:56107200-56109000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr15:56107200-56110800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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