Variant report

Variant	rs4647358
Chromosome Location	chr9:98078591-98078592
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:98078160..98080305-chr9:98637483..98639375,2	MCF-7	breast:
2	chr9:98066646..98069496-chr9:98077286..98078854,2	K562	blood:
3	chr9:98059172..98061613-chr9:98077027..98078592,2	MCF-7	breast:
4	chr9:98054521..98056977-chr9:98076532..98078926,2	K562	blood:
5	chr17:40540218..40543029-chr9:98077707..98079432,2	MCF-7	breast:
6	chr9:98067922..98070273-chr9:98076676..98079113,2	MCF-7	breast:
7	chr9:98078552..98082181-chr9:98188850..98192317,4	MCF-7	breast:
8	chr9:98078123..98080907-chr9:98268002..98270715,3	K562	blood:
9	chr9:98078194..98081816-chr9:98277777..98279552,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000271155	Chromatin interaction
ENSG00000182150	Chromatin interaction
ENSG00000237857	Chromatin interaction
ENSG00000175611	Chromatin interaction
ENSG00000168610	Chromatin interaction
ENSG00000230221	Chromatin interaction
ENSG00000185920	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs4647400	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs4647483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647489	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647531	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647556	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647557	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59196867	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98075400-98078600	Weak transcription	Stomach Mucosa	stomach
2	chr9:98075600-98078600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr9:98075600-98079000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr9:98075600-98079200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:98075800-98078600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr9:98075800-98078600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:98075800-98078600	Weak transcription	Primary B cells from peripheral blood	blood
8	chr9:98075800-98078600	Weak transcription	Primary T cells from cord blood	blood
9	chr9:98075800-98078600	Weak transcription	Adipose Nuclei	Adipose
10	chr9:98075800-98078600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr9:98075800-98078600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr9:98075800-98078600	Weak transcription	Brain Substantia Nigra	brain
13	chr9:98075800-98078600	Weak transcription	Colonic Mucosa	Colon
14	chr9:98075800-98078600	Weak transcription	Pancreas	Pancrea
15	chr9:98075800-98078600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr9:98075800-98078600	Weak transcription	Right Ventricle	heart
17	chr9:98075800-98078600	Weak transcription	Thymus	Thymus
18	chr9:98075800-98078600	Weak transcription	HSMM	muscle
19	chr9:98075800-98078600	Weak transcription	HSMMtube	muscle
20	chr9:98075800-98078800	Weak transcription	Placenta	Placenta
21	chr9:98075800-98078800	Weak transcription	Psoas Muscle	Psoas
22	chr9:98075800-98079000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr9:98075800-98079000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr9:98075800-98079000	Weak transcription	Esophagus	oesophagus
25	chr9:98075800-98079000	Weak transcription	Left Ventricle	heart
26	chr9:98075800-98079000	Weak transcription	Ovary	ovary
27	chr9:98075800-98079200	Weak transcription	Gastric	stomach
28	chr9:98075800-98079200	Weak transcription	Small Intestine	intestine
29	chr9:98076000-98078600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr9:98076000-98078600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr9:98076000-98078600	Weak transcription	Brain Anterior Caudate	brain
32	chr9:98076000-98078600	Weak transcription	Brain Cingulate Gyrus	brain
33	chr9:98076000-98078600	Weak transcription	Brain Hippocampus Middle	brain
34	chr9:98076000-98078600	Weak transcription	Colon Smooth Muscle	Colon
35	chr9:98076000-98078600	Weak transcription	Fetal Brain Male	brain
36	chr9:98076000-98078600	Weak transcription	Fetal Muscle Trunk	muscle
37	chr9:98076000-98078600	Weak transcription	Stomach Smooth Muscle	stomach
38	chr9:98076000-98078600	Weak transcription	NH-A	brain
39	chr9:98076000-98078600	Weak transcription	Osteobl	bone
40	chr9:98076000-98078800	Weak transcription	Primary hematopoietic stem cells	blood
41	chr9:98076000-98078800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr9:98076000-98078800	Weak transcription	Right Atrium	heart
43	chr9:98076200-98078600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr9:98076200-98078600	Weak transcription	Liver	Liver
45	chr9:98076200-98078600	Weak transcription	Brain Angular Gyrus	brain
46	chr9:98076400-98078600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr9:98076400-98078600	Weak transcription	NHDF-Ad	bronchial
48	chr9:98076600-98078600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr9:98077200-98078600	Enhancers	ES-I3 Cell Line	embryonic stem cell
50	chr9:98077200-98078800	Flanking Active TSS	A549	lung

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