Variant report

Variant	rs4647363
Chromosome Location	chr9:98069071-98069072
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:98062934..98065072-chr9:98067930..98070513,2	K562	blood:
2	chr9:98067681..98069650-chr9:98269294..98272244,2	MCF-7	breast:
3	chr9:98067922..98070273-chr9:98076676..98079113,2	MCF-7	breast:
4	chr9:98058741..98060444-chr9:98067413..98069103,2	MCF-7	breast:
5	chr9:98066646..98069496-chr9:98077286..98078854,2	K562	blood:

Variant related genes	Relation type
ENSG00000185920	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16912035	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98060400-98075000	Weak transcription	NHEK	skin
2	chr9:98063400-98069800	Weak transcription	Fetal Kidney	kidney
3	chr9:98066200-98075200	Weak transcription	Left Ventricle	heart
4	chr9:98066800-98074800	Weak transcription	Thymus	Thymus
5	chr9:98067000-98069200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr9:98067000-98075200	Weak transcription	Lung	lung
7	chr9:98067400-98069200	Enhancers	NHDF-Ad	bronchial
8	chr9:98067400-98070400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:98067600-98070400	Enhancers	Duodenum Mucosa	Duodenum
10	chr9:98067800-98074200	Weak transcription	GM12878-XiMat	blood
11	chr9:98068000-98069600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr9:98068200-98070400	Enhancers	Liver	Liver
13	chr9:98068200-98070400	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr9:98068200-98070800	Enhancers	Fetal Intestine Small	intestine
15	chr9:98068400-98075200	Weak transcription	HMEC	breast
16	chr9:98068600-98069400	Enhancers	H1 Cell Line	embryonic stem cell
17	chr9:98068600-98069400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:98068600-98069400	Enhancers	H9 Cell Line	embryonic stem cell
19	chr9:98068600-98069400	Enhancers	Pancreas	Pancrea
20	chr9:98068600-98069400	Enhancers	Psoas Muscle	Psoas
21	chr9:98068600-98069600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr9:98068600-98071000	Enhancers	Fetal Intestine Large	intestine
23	chr9:98068800-98069200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr9:98068800-98069200	Enhancers	A549	lung
25	chr9:98068800-98069600	Enhancers	Small Intestine	intestine
26	chr9:98068800-98069800	Weak transcription	HepG2	liver
27	chr9:98068800-98070000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr9:98068800-98070200	Enhancers	HSMM	muscle
29	chr9:98068800-98075200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr9:98068800-98075200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr9:98068800-98075200	Weak transcription	Brain Hippocampus Middle	brain
32	chr9:98068800-98075200	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr9:98068800-98075400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr9:98069000-98069200	Enhancers	Muscle Satellite Cultured Cells	--
35	chr9:98069000-98070200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr9:98069000-98075000	Weak transcription	Fetal Stomach	stomach
37	chr9:98069000-98075200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr9:98069000-98075200	Weak transcription	Fetal Lung	lung
39	chr9:98069000-98075200	Weak transcription	HUVEC	blood vessel
40	chr9:98069000-98075200	Weak transcription	NHLF	lung
41	chr9:98069000-98077200	Weak transcription	Hela-S3	cervix
42	chr9:98069000-98077400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr9:98069000-98077400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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