Variant report

Variant	rs4647522
Chromosome Location	chr9:97878467-97878468
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:97854621..97856479-chr9:97877579..97880119,2	MCF-7	breast:
2	chr9:97870812..97875678-chr9:97877049..97880671,6	MCF-7	breast:
3	chr9:97543881..97546251-chr9:97877012..97878799,2	MCF-7	breast:
4	chr9:97545073..97545896-chr9:97877721..97879077,4	MCF-7	breast:
5	chr9:97865195..97867947-chr9:97877492..97879411,2	K562	blood:
6	chr9:97876730..97879419-chr9:97879799..97882448,2	MCF-7	breast:
7	chr9:97850795..97854333-chr9:97877834..97880159,4	MCF-7	breast:
8	chr9:97487908..97491821-chr9:97876837..97879979,5	MCF-7	breast:
9	chr9:97865773..97866507-chr9:97877987..97878657,2	MCF-7	breast:
10	chr9:97443321..97444335-chr9:97877995..97879538,5	MCF-7	breast:
11	chr9:97545090..97545936-chr9:97878045..97878545,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4647520	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
2	nsv1038106	chr9:97793038-97881416	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
3	nsv1038523	chr9:97797032-97923774	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
4	nsv540175	chr9:97797032-97923774	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
5	nsv831656	chr9:97831551-97989980	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97844000-97898400	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr9:97846200-97880000	Weak transcription	Primary B cells from cord blood	blood
3	chr9:97855400-97884800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr9:97855600-97878600	Weak transcription	Stomach Mucosa	stomach
5	chr9:97860400-97879000	Strong transcription	Liver	Liver
6	chr9:97861200-97889800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr9:97863600-97883600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:97865600-97883600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr9:97866000-97883400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr9:97866000-97889600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr9:97866200-97889600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr9:97866400-97886600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr9:97867000-97878800	Weak transcription	Right Atrium	heart
14	chr9:97868600-97889400	Weak transcription	Fetal Heart	heart
15	chr9:97869600-97878800	Weak transcription	Brain Germinal Matrix	brain
16	chr9:97869800-97886400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr9:97869800-97889800	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr9:97870000-97883400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr9:97870400-97878600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr9:97870400-97889600	Weak transcription	Fetal Thymus	thymus
21	chr9:97870600-97889800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr9:97870800-97878800	Weak transcription	Brain Angular Gyrus	brain
23	chr9:97871600-97878800	Weak transcription	Brain Substantia Nigra	brain
24	chr9:97872000-97881000	Weak transcription	NH-A	brain
25	chr9:97873200-97878600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr9:97873600-97878800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr9:97874600-97878600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr9:97874600-97889400	Weak transcription	Colonic Mucosa	Colon
29	chr9:97874800-97881000	Weak transcription	Fetal Kidney	kidney
30	chr9:97874800-97883600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr9:97875000-97878600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr9:97875000-97879000	Weak transcription	Fetal Brain Female	brain
33	chr9:97875000-97879000	Weak transcription	HMEC	breast
34	chr9:97875000-97883400	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr9:97875000-97889800	Weak transcription	Hela-S3	cervix
36	chr9:97875200-97878800	Weak transcription	Brain Cingulate Gyrus	brain
37	chr9:97875200-97878800	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr9:97875200-97878800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr9:97875200-97881000	Weak transcription	Osteobl	bone
40	chr9:97875200-97883600	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr9:97875200-97889600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr9:97875200-97889600	Weak transcription	HSMMtube	muscle
43	chr9:97875400-97879000	Weak transcription	Brain Anterior Caudate	brain
44	chr9:97875400-97881600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr9:97875400-97889400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr9:97875400-97889400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr9:97875400-97895400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr9:97875400-97900400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr9:97875600-97878800	Weak transcription	Brain Hippocampus Middle	brain
50	chr9:97875600-97878800	Weak transcription	Duodenum Smooth Muscle	Duodenum

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