Variant report

Variant	rs4647972
Chromosome Location	chr4:103430534-103430535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:103426144..103427805-chr4:103429263..103431794,2	MCF-7	breast:
2	chr4:103427425..103432192-chr4:103434612..103439992,6	K562	blood:
3	chr4:103428188..103431133-chr4:103431767..103434518,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4648090	1.00[CHB][hapmap]
rs6833962	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830020	chr4:103387343-103581284	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1003490	chr4:103391483-103521772	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1004030	chr4:103419352-103504042	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv537203	chr4:103419352-103504042	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103423800-103430800	Weak transcription	Left Ventricle	heart
2	chr4:103423800-103431000	Weak transcription	Gastric	stomach
3	chr4:103423800-103439800	Weak transcription	Ovary	ovary
4	chr4:103423800-103439800	Weak transcription	Pancreas	Pancrea
5	chr4:103423800-103439800	Weak transcription	Spleen	Spleen
6	chr4:103423800-103445800	Weak transcription	Lung	lung
7	chr4:103424000-103446000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:103424800-103433400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr4:103424800-103442400	Weak transcription	HSMM	muscle
10	chr4:103425200-103439800	Weak transcription	Right Ventricle	heart
11	chr4:103425200-103456400	Weak transcription	Osteobl	bone
12	chr4:103425400-103431200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr4:103425600-103437200	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr4:103425600-103448400	Weak transcription	Fetal Thymus	thymus
15	chr4:103425800-103433000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr4:103426000-103431600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr4:103426000-103431800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr4:103426000-103433600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr4:103426000-103434000	Weak transcription	K562	blood
20	chr4:103426000-103435000	Weak transcription	Fetal Intestine Small	intestine
21	chr4:103426000-103435600	Weak transcription	Brain Angular Gyrus	brain
22	chr4:103426000-103436000	Weak transcription	Primary B cells from peripheral blood	blood
23	chr4:103426000-103439000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr4:103426000-103439200	Weak transcription	Rectal Smooth Muscle	rectum
25	chr4:103426000-103444400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr4:103426000-103452600	Weak transcription	NH-A	brain
27	chr4:103426000-103456400	Weak transcription	NHDF-Ad	bronchial
28	chr4:103426200-103436600	Weak transcription	Dnd41	blood
29	chr4:103426200-103438800	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr4:103426200-103439000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr4:103426200-103439600	Weak transcription	Stomach Mucosa	stomach
32	chr4:103426200-103445800	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr4:103426400-103430800	Weak transcription	Psoas Muscle	Psoas
34	chr4:103426400-103430800	Weak transcription	Right Atrium	heart
35	chr4:103426400-103432800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr4:103426400-103432800	Weak transcription	Brain Anterior Caudate	brain
37	chr4:103426400-103433000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr4:103426400-103433000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr4:103426400-103433400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr4:103426400-103435200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr4:103426400-103435400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr4:103426400-103439800	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr4:103426400-103442800	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr4:103426400-103442800	Weak transcription	NHEK	skin
45	chr4:103426400-103450000	Weak transcription	HMEC	breast
46	chr4:103426400-103452600	Weak transcription	HSMMtube	muscle
47	chr4:103426400-103460800	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr4:103427000-103439200	Weak transcription	Liver	Liver
49	chr4:103427600-103432800	Weak transcription	Hela-S3	cervix
50	chr4:103427600-103435600	Weak transcription	Fetal Lung	lung

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