Variant report

Variant	rs4650694
Chromosome Location	chr1:186096282-186096283
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:186095383..186097178-chr1:186103519..186106184,2	MCF-7	breast:
2	chr1:186096268..186096907-chr1:186121572..186122420,2	MCF-7	breast:
3	chr1:186088498..186090978-chr1:186095193..186097428,2	K562	blood:
4	chr1:186088227..186090978-chr1:186093737..186096693,2	K562	blood:
5	chr1:186092602..186094219-chr1:186095826..186097658,2	K562	blood:
6	chr1:186084949..186088330-chr1:186095742..186098287,3	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1022670	0.80[ASN][1000 genomes]
rs1022671	0.80[ASN][1000 genomes]
rs10489755	0.90[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10489756	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10752962	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10798037	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10911819	0.82[ASN][1000 genomes]
rs10911820	0.80[ASN][1000 genomes]
rs10911825	0.89[ASN][1000 genomes]
rs10911826	0.89[ASN][1000 genomes]
rs10911828	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10911829	0.85[ASN][1000 genomes]
rs12061689	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12078939	0.83[ASN][1000 genomes]
rs12080760	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12122227	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12124204	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12133656	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12565788	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1322374	0.96[ASN][1000 genomes]
rs1358936	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1555495	0.81[ASN][1000 genomes]
rs1830627	0.80[ASN][1000 genomes]
rs1853249	0.80[ASN][1000 genomes]
rs1998088	0.80[ASN][1000 genomes]
rs2038601	0.80[ASN][1000 genomes]
rs2057387	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2057388	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2146098	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2224575	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2891228	0.80[ASN][1000 genomes]
rs2891229	0.80[ASN][1000 genomes]
rs2891230	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3737941	0.95[ASN][1000 genomes]
rs3845367	0.89[ASN][1000 genomes]
rs4528072	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4535962	0.89[ASN][1000 genomes]
rs4650695	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4651297	0.80[ASN][1000 genomes]
rs4651300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6659783	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6664918	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6673390	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6689111	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6696910	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6698064	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6701244	0.82[ASN][1000 genomes]
rs6702313	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6703518	0.80[ASN][1000 genomes]
rs721153	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7516516	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7543494	0.80[ASN][1000 genomes]
rs7549552	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7552198	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9286859	0.89[ASN][1000 genomes]
rs9286860	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1004481	chr1:186095854-186750968	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv535223	chr1:186095854-186750968	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186046400-186135200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr1:186052200-186118200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:186064600-186113200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:186072600-186108400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:186072800-186107800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:186073000-186121400	Weak transcription	NH-A	brain
7	chr1:186075000-186113600	Weak transcription	Lung	lung
8	chr1:186076400-186106800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr1:186076800-186097200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr1:186079000-186108000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr1:186080400-186121400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr1:186084400-186106600	Weak transcription	Adipose Nuclei	Adipose
13	chr1:186089400-186107600	Weak transcription	Fetal Lung	lung
14	chr1:186092600-186099600	Weak transcription	Aorta	Aorta
15	chr1:186092600-186099600	Weak transcription	Left Ventricle	heart
16	chr1:186092600-186106800	Weak transcription	Liver	Liver
17	chr1:186092800-186108200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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