Variant report

Variant	rs4653465
Chromosome Location	chr1:226938149-226938150
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1097296	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1110033	0.97[EUR][1000 genomes]
rs11577480	0.96[ASN][1000 genomes]
rs11581975	0.86[ASN][1000 genomes]
rs6662601	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6694031	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs708777	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs708778	0.99[EUR][1000 genomes]
rs708779	1.00[EUR][1000 genomes]
rs835667	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835671	0.97[EUR][1000 genomes]
rs835672	0.86[AFR][1000 genomes]
rs9426597	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997468	chr1:226858660-226975311	Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv535316	chr1:226858660-226975311	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226936400-226938800	Weak transcription	Thymus	Thymus
2	chr1:226936400-226941000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr1:226936400-226941200	Weak transcription	Primary T cells from cord blood	blood
4	chr1:226936400-226941200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr1:226936400-226941400	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr1:226937200-226938600	Weak transcription	Fetal Thymus	thymus
7	chr1:226937400-226941600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links