Variant report

Variant	rs465496
Chromosome Location	chr5:115009351-115009352
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1067726	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1067728	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149472	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs152416	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs153073	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs153074	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1651414	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1698097	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs171662	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs173733	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2431441	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2431443	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2434727	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2455447	0.89[ASN][1000 genomes]
rs2455450	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs249720	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs249721	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs251878	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs251879	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2545847	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2561860	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2652663	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3105151	0.94[ASN][1000 genomes]
rs397908	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs403039	0.89[ASN][1000 genomes]
rs422161	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs425666	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs432032	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs440138	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs440925	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs441398	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs447079	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs455226	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs459180	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs459386	0.82[AMR][1000 genomes]
rs460451	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs461084	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs461105	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs461952	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs462799	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs465126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs465457	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs465997	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs712556	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7733817	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs791565	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115008400-115009600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:115008600-115010000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr5:115008800-115009800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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