Variant report

Variant	rs4655357
Chromosome Location	chr1:214667620-214667621
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214660865..214663396-chr1:214666846..214669507,2	MCF-7	breast:
2	chr1:214665493..214668241-chr1:214672288..214674423,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10864105	0.85[AFR][1000 genomes]
rs10864106	0.82[AFR][1000 genomes]
rs10864107	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11120341	0.85[AFR][1000 genomes]
rs4638091	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4655356	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4655358	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468094	chr1:214654965-214687725	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv549180	chr1:214654965-214687725	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214641400-214667800	Weak transcription	Hela-S3	cervix
2	chr1:214646000-214672200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:214648000-214669400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:214651800-214668000	Weak transcription	HSMMtube	muscle
5	chr1:214654400-214677400	Weak transcription	Gastric	stomach
6	chr1:214656800-214667800	Weak transcription	A549	lung
7	chr1:214658600-214668000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:214660200-214667800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr1:214660200-214667800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr1:214660200-214668000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr1:214661400-214667800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr1:214663200-214673600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr1:214663800-214667800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr1:214664600-214667800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr1:214664600-214669400	Weak transcription	Fetal Kidney	kidney
16	chr1:214664800-214671800	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr1:214664800-214672000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr1:214665000-214669600	Weak transcription	Spleen	Spleen
19	chr1:214665400-214667800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr1:214665400-214668600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr1:214665400-214676600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr1:214665400-214705400	Weak transcription	Right Ventricle	heart
23	chr1:214665600-214668400	Enhancers	NHLF	lung
24	chr1:214665600-214670200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr1:214665800-214668000	Weak transcription	HUVEC	blood vessel
26	chr1:214665800-214669000	Enhancers	NHDF-Ad	bronchial
27	chr1:214666000-214668800	Enhancers	Muscle Satellite Cultured Cells	--
28	chr1:214666000-214669000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr1:214666600-214667800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr1:214666600-214667800	Weak transcription	Colon Smooth Muscle	Colon
31	chr1:214666600-214667800	Weak transcription	NH-A	brain
32	chr1:214666600-214668000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr1:214666600-214668800	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr1:214666600-214669400	Weak transcription	Rectal Smooth Muscle	rectum
35	chr1:214666600-214669600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr1:214666600-214671600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr1:214666600-214672400	Weak transcription	Ovary	ovary
38	chr1:214666600-214672400	Enhancers	Osteobl	bone
39	chr1:214666600-214673800	Weak transcription	Stomach Smooth Muscle	stomach
40	chr1:214666600-214675200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr1:214666600-214677600	Weak transcription	Pancreas	Pancrea
42	chr1:214666800-214667800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr1:214666800-214667800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr1:214666800-214667800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr1:214666800-214667800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr1:214666800-214667800	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr1:214666800-214668200	Weak transcription	Fetal Heart	heart
48	chr1:214666800-214669200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr1:214666800-214669400	Weak transcription	Aorta	Aorta
50	chr1:214666800-214670600	Enhancers	NHEK	skin

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