Variant report
| Variant | rs4656205 |
|---|---|
| Chromosome Location | chr1:170104870-170104871 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:170094347..170096497-chr1:170102860..170105112,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10800501 | 0.86[ASN][1000 genomes] |
| rs1411464 | 0.86[ASN][1000 genomes] |
| rs2786921 | 0.96[ASN][1000 genomes] |
| rs471569 | 0.90[ASN][1000 genomes] |
| rs471781 | 0.96[ASN][1000 genomes] |
| rs493966 | 0.95[ASN][1000 genomes] |
| rs495125 | 0.96[ASN][1000 genomes] |
| rs495524 | 0.86[ASN][1000 genomes] |
| rs504942 | 0.96[ASN][1000 genomes] |
| rs514257 | 0.83[ASN][1000 genomes] |
| rs522361 | 0.95[ASN][1000 genomes] |
| rs523222 | 0.96[ASN][1000 genomes] |
| rs524309 | 0.96[ASN][1000 genomes] |
| rs525285 | 0.95[ASN][1000 genomes] |
| rs533387 | 0.96[ASN][1000 genomes] |
| rs548356 | 0.96[ASN][1000 genomes] |
| rs548582 | 0.96[ASN][1000 genomes] |
| rs550297 | 0.90[ASN][1000 genomes] |
| rs551042 | 0.84[ASN][1000 genomes] |
| rs556764 | 0.85[ASN][1000 genomes] |
| rs563559 | 0.96[ASN][1000 genomes] |
| rs572480 | 0.96[ASN][1000 genomes] |
| rs575119 | 0.96[ASN][1000 genomes] |
| rs576152 | 0.96[ASN][1000 genomes] |
| rs579438 | 0.90[ASN][1000 genomes] |
| rs6704499 | 0.96[ASN][1000 genomes] |
| rs9427182 | 0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014033 | chr1:169968488-170453021 | Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv535200 | chr1:169968488-170453021 | Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 18 gene(s) | inside rSNPs | diseases |
| 3 | nsv999310 | chr1:170065943-170223350 | Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:170104200-170107800 | Weak transcription | Fetal Muscle Leg | muscle |
| 2 | chr1:170104600-170105000 | Enhancers | Fetal Muscle Trunk | muscle |
