Variant report

Variant	rs4656239
Chromosome Location	chr1:159526792-159526793
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12095599	1.00[EUR][1000 genomes]
rs1446962	1.00[EUR][1000 genomes]
rs1891185	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58086372	1.00[EUR][1000 genomes]
rs73020707	1.00[EUR][1000 genomes]
rs73020710	1.00[EUR][1000 genomes]
rs7515532	1.00[EUR][1000 genomes]
rs7556244	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005195	chr1:159452759-159910337	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	esv3343880	chr1:159526083-159527084	Flanking Active TSS Active TSS Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159526200-159527200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:159526600-159526800	Flanking Active TSS	Liver	Liver
3	chr1:159526600-159527000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:159526600-159527800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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