Variant report

Variant	rs4656287
Chromosome Location	chr1:161064008-161064009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:161060699..161064071-chr1:161067619..161070501,3	K562	blood:
2	chr1:161059617..161061388-chr1:161063032..161065856,2	K562	blood:
3	chr1:160672794..160675348-chr1:161062304..161065279,2	K562	blood:
4	chr1:161062211..161064047-chr1:161065877..161068707,3	K562	blood:
5	chr1:161063446..161066322-chr1:161070095..161071635,2	MCF-7	breast:
6	chr1:160988378..160992160-chr1:161060181..161066299,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162755	Chromatin interaction
ENSG00000158769	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11265549	0.80[CEU][hapmap]
rs12401309	0.88[GIH][hapmap];0.80[MEX][hapmap];0.83[TSI][hapmap]
rs1467742	0.92[GIH][hapmap]
rs3820097	0.92[GIH][hapmap];0.91[MEX][hapmap]
rs3892376	0.91[MEX][hapmap]
rs4233364	0.90[CEU][hapmap]
rs4656288	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4656979	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4656981	0.92[ASN][1000 genomes]
rs72480265	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161039600-161066800	Weak transcription	Right Atrium	heart
2	chr1:161055200-161064600	Weak transcription	Fetal Lung	lung
3	chr1:161060200-161065200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr1:161061200-161067000	Weak transcription	Primary T cells from cord blood	blood
5	chr1:161061400-161066800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr1:161062600-161067800	Weak transcription	Lung	lung
7	chr1:161062800-161065800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:161062800-161066200	Weak transcription	HSMMtube	muscle
9	chr1:161062800-161066400	Weak transcription	Hela-S3	cervix
10	chr1:161062800-161066800	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr1:161062800-161067600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr1:161063000-161067200	Weak transcription	A549	lung
13	chr1:161063200-161066000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:161063200-161066000	Weak transcription	HSMM	muscle
15	chr1:161063200-161066200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr1:161063200-161066200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr1:161063200-161066400	Weak transcription	NHLF	lung
18	chr1:161063200-161066800	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr1:161063200-161067000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr1:161063200-161067200	Weak transcription	NH-A	brain
21	chr1:161063400-161065800	Weak transcription	Esophagus	oesophagus
22	chr1:161063400-161066000	Weak transcription	HMEC	breast
23	chr1:161063400-161066200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr1:161063400-161066200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr1:161063400-161066600	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr1:161063400-161067200	Weak transcription	Osteobl	bone
27	chr1:161063600-161064800	Weak transcription	GM12878-XiMat	blood
28	chr1:161063600-161065800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr1:161063600-161066000	Weak transcription	NHEK	skin
30	chr1:161063600-161066200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr1:161063800-161064800	Weak transcription	Placenta	Placenta
32	chr1:161064000-161065800	Weak transcription	Placenta Amnion	Placenta Amnion

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