Variant report

Variant	rs4656977
Chromosome Location	chr1:161005476-161005477
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:161004664..161006659-chr1:161007054..161009588,2	MCF-7	breast:
2	chr1:160989495..160995605-chr1:161004888..161010340,15	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158769	Chromatin interaction
ENSG00000270149	Chromatin interaction
ENSG00000215845	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11265544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11588189	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2516838	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2774279	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34339899	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35925761	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4656974	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160991200-161007800	Weak transcription	HSMMtube	muscle
2	chr1:160991600-161007000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr1:160991800-161007600	Weak transcription	Thymus	Thymus
4	chr1:160991800-161007800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr1:160992000-161007000	Weak transcription	Fetal Intestine Small	intestine
6	chr1:160992200-161008000	Weak transcription	HUVEC	blood vessel
7	chr1:160997200-161008000	Weak transcription	A549	lung
8	chr1:161001800-161005800	Enhancers	Primary B cells from peripheral blood	blood
9	chr1:161001800-161006800	Weak transcription	Lung	lung
10	chr1:161001800-161007800	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr1:161002000-161007600	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr1:161002200-161007600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr1:161002600-161007400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr1:161002800-161007200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:161003000-161007000	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr1:161003000-161007000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr1:161003000-161007200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr1:161003000-161007400	Weak transcription	GM12878-XiMat	blood
19	chr1:161003000-161008200	Weak transcription	Osteobl	bone
20	chr1:161003200-161006800	Weak transcription	HepG2	liver
21	chr1:161003200-161007000	Weak transcription	Liver	Liver
22	chr1:161003200-161007200	Weak transcription	Fetal Heart	heart
23	chr1:161003200-161007400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr1:161003200-161007600	Weak transcription	HSMM	muscle
25	chr1:161003200-161007800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr1:161003200-161008800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr1:161003800-161006800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr1:161003800-161007000	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr1:161003800-161007000	Weak transcription	Adipose Nuclei	Adipose
30	chr1:161003800-161007400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr1:161003800-161007600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr1:161004000-161007000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr1:161004000-161007000	Weak transcription	NHEK	skin
34	chr1:161004000-161007200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr1:161004000-161007600	Weak transcription	HMEC	breast
36	chr1:161004000-161009200	Weak transcription	Hela-S3	cervix
37	chr1:161004200-161007000	Weak transcription	Placenta	Placenta
38	chr1:161004200-161008000	Weak transcription	Spleen	Spleen
39	chr1:161004400-161005600	Enhancers	H1 Cell Line	embryonic stem cell
40	chr1:161004400-161007000	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr1:161004600-161005600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr1:161004600-161005800	Enhancers	Primary B cells from cord blood	blood
43	chr1:161005000-161007000	Weak transcription	Brain Germinal Matrix	brain
44	chr1:161005000-161007200	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr1:161005000-161007200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr1:161005000-161007400	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr1:161005000-161007600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr1:161005000-161009400	Weak transcription	K562	blood
49	chr1:161005200-161005600	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr1:161005200-161005600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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