Variant report

Variant	rs4657900
Chromosome Location	chr1:194013329-194013330
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12028846	0.81[AFR][1000 genomes]
rs12750617	0.81[AFR][1000 genomes]
rs524329	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv872834	chr1:193889533-194482304	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:194009200-194013800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:194010200-194013600	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr1:194010200-194013600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr1:194010200-194014000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr1:194010200-194020800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr1:194012800-194014400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr1:194013000-194014600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:194013000-194015200	Enhancers	NHEK	skin
9	chr1:194013200-194014200	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr1:194013200-194014200	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr1:194013200-194014200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:194013200-194014400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr1:194013200-194014400	Enhancers	Primary T cells from cord blood	blood
14	chr1:194013200-194014400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr1:194013200-194016600	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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