Variant report

Variant	rs4659000
Chromosome Location	chr1:119828151-119828152
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10802086	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12121763	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1341802	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9730056	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932014	chr1:119476480-120471049	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	86 gene(s)	inside rSNPs	diseases
2	nsv831192	chr1:119671172-119843226	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	nsv917091	chr1:119688975-120023222	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	esv34089	chr1:119752112-120072961	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv946292	chr1:119827363-119829741	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:119819200-119835200	Weak transcription	Liver	Liver
2	chr1:119822800-119828400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:119823000-119840600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:119823400-119833000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:119827200-119829200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:119827400-119828800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:119827400-119828800	Enhancers	HMEC	breast
8	chr1:119827400-119829400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:119827600-119828200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:119827600-119828400	Enhancers	NHEK	skin
11	chr1:119827600-119828600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr1:119827600-119828600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:119827600-119828800	Enhancers	NHDF-Ad	bronchial
14	chr1:119827600-119828800	Enhancers	Osteobl	bone
15	chr1:119827800-119828400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr1:119827800-119828600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:119827800-119828600	Enhancers	HSMM	muscle
18	chr1:119828000-119828400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr1:119828000-119828400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr1:119828000-119828400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr1:119828000-119828400	Enhancers	Adipose Nuclei	Adipose
22	chr1:119828000-119828400	Enhancers	HSMMtube	muscle
23	chr1:119828000-119828400	Enhancers	NH-A	brain
24	chr1:119828000-119828600	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr1:119828000-119828600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr1:119828000-119828600	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr1:119828000-119828600	Enhancers	NHLF	lung

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