Variant report
| Variant | rs4659155 |
|---|---|
| Chromosome Location | chr1:119799689-119799690 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:119796390..119798012-chr1:119798181..119799738,2 | MCF-7 | breast: |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-HAO2-8 | chr1:119799424-119800204 | NONHSAT005541 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000238679 | TF binding region |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs1341799 | 1.00[AMR][1000 genomes] |
| rs17023397 | 1.00[AMR][1000 genomes] |
| rs17023399 | 1.00[AMR][1000 genomes] |
| rs17023406 | 1.00[AMR][1000 genomes] |
| rs17023407 | 1.00[AMR][1000 genomes] |
| rs17023438 | 1.00[AMR][1000 genomes] |
| rs17023448 | 1.00[AMR][1000 genomes] |
| rs33920337 | 1.00[AMR][1000 genomes] |
| rs4514280 | 1.00[AMR][1000 genomes] |
| rs57010239 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv932014 | chr1:119476480-120471049 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 86 gene(s) | inside rSNPs | diseases |
| 2 | nsv831192 | chr1:119671172-119843226 | Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 36 gene(s) | inside rSNPs | diseases |
| 3 | nsv917091 | chr1:119688975-120023222 | Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 4 | esv34089 | chr1:119752112-120072961 | Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:119793400-119801800 | Weak transcription | Liver | Liver |
