Variant report

Variant	rs4659156
Chromosome Location	chr1:119827752-119827753
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1341804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1539187	0.91[YRI][hapmap]
rs1935247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2027476	0.91[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4480401	1.00[AMR][1000 genomes]
rs6428808	1.00[AMR][1000 genomes]
rs6428810	1.00[AMR][1000 genomes]
rs6428813	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932014	chr1:119476480-120471049	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	86 gene(s)	inside rSNPs	diseases
2	nsv831192	chr1:119671172-119843226	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	nsv917091	chr1:119688975-120023222	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	esv34089	chr1:119752112-120072961	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv946292	chr1:119827363-119829741	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:119819200-119835200	Weak transcription	Liver	Liver
2	chr1:119822800-119828400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:119823000-119828000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr1:119823000-119840600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:119823200-119827800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr1:119823200-119828000	Weak transcription	HSMMtube	muscle
7	chr1:119823200-119828000	Weak transcription	NHLF	lung
8	chr1:119823400-119827800	Weak transcription	HSMM	muscle
9	chr1:119823400-119828000	Weak transcription	Adipose Nuclei	Adipose
10	chr1:119823400-119828000	Weak transcription	NH-A	brain
11	chr1:119823400-119833000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:119823600-119827800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr1:119827200-119829200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:119827400-119828800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr1:119827400-119828800	Enhancers	HMEC	breast
16	chr1:119827400-119829400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr1:119827600-119828000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr1:119827600-119828000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr1:119827600-119828200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr1:119827600-119828400	Enhancers	NHEK	skin
21	chr1:119827600-119828600	Enhancers	Muscle Satellite Cultured Cells	--
22	chr1:119827600-119828600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr1:119827600-119828800	Enhancers	NHDF-Ad	bronchial
24	chr1:119827600-119828800	Enhancers	Osteobl	bone

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